Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g01062 ATGGAGTTCCCAAATAATAATAATGATAACAATAATCAAGCCATGTCAGATTCATCATCCCCACAGAGAAAGATGGGAAGAGGGAAGATTGAGATCAAGAGGATCGAGAACACCACAAATCGCCAGGTCACTTTCTGTAAGCGCAGAAATGGCCTCCTCAAGAAGGCTTATGAGCTCTCTGTGCTTTGCGATGCTGAGGTCGCCCTCATCGTCTTCTCCACTCGTGGTCGCCTGTATGAATATGCTAATAACAGTGTGAAGGCAACAATAGAGAGGTACAAGAAAGCATGTTCAGATACTACTGGTGCTGGATCCACTTCTGAAGCTAATGCTCAGTATTATCAGCAAGAAGCAGCCAAACTGCGTGCTCAAATTAGTAACCTGCGCAATAACAACAGGCAAATGATGGGGGAGACATTGGCAGGTTTGAATGCTAGAGATCTCAAGAACTTGGAGGGTAAGTTAGAGAGAGGCATCAGCAGAATCCGTTCCAAAAAGAATGAGCTTCTGTTTGCAGAAATTGATTACATGCAGAAGAGGGAGGTAGACTTGCACAGTAACAACCAGCTTCTTCGCGCTAAGATAGCAGAGAGTGAGAGAAACCAGGAGCAGCAGCAGCATAACATGAATGTGATGGTATCAAGCTATGAGAATACAAGTGAGCATAATAATCAATTTGACTCGAGAGCCTTCTTCCAAGTCACTGGCTTACAACCTCACTACCCTCCCCATGACCACATCCCCCTTCAATTAGTGTGA 759 0.4466 MEFPNNNNDNNNQAMSDSSSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKATIERYKKACSDTTGAGSTSEANAQYYQQEAAKLRAQISNLRNNNRQMMGETLAGLNARDLKNLEGKLERGISRIRSKKNELLFAEIDYMQKREVDLHSNNQLLRAKIAESERNQEQQQHNMNVMVSSYENTSEHNNQFDSRAFFQVTGLQPHYPPHDHIPLQLV 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g01062 252 Pfam K-box region 107 195 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr11g01062 252 ProSitePatterns MADS-box domain signature. 27 81 IPR002100 GO:0003677|GO:0046983
Accr11g01062 252 FunFam agamous-like MADS-box protein AGL11 37 120 - -
Accr11g01062 252 ProSiteProfiles MADS-box domain profile. 25 85 IPR002100 GO:0003677|GO:0046983
Accr11g01062 252 PRINTS MADS domain signature 62 83 IPR002100 GO:0003677|GO:0046983
Accr11g01062 252 PRINTS MADS domain signature 47 62 IPR002100 GO:0003677|GO:0046983
Accr11g01062 252 PRINTS MADS domain signature 27 47 IPR002100 GO:0003677|GO:0046983
Accr11g01062 252 Gene3D - 37 103 IPR036879 GO:0003677|GO:0046983
Accr11g01062 252 SMART madsneu2 25 84 IPR002100 GO:0003677|GO:0046983
Accr11g01062 252 Coils Coil 148 168 - -
Accr11g01062 252 Coils Coil 111 138 - -
Accr11g01062 252 ProSiteProfiles K-box domain profile. 111 201 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr11g01062 252 PANTHER SERUM RESPONSE FACTOR HOMOLOG 25 207 - -
Accr11g01062 252 SUPERFAMILY SRF-like 26 97 IPR036879 GO:0003677|GO:0046983
Accr11g01062 252 Coils Coil 188 208 - -
Accr11g01062 252 MobiDBLite consensus disorder prediction 1 23 - -
Accr11g01062 252 CDD MADS_MEF2_like 26 99 IPR033896 GO:0000977|GO:0045944
Accr11g01062 252 MobiDBLite consensus disorder prediction 1 30 - -
Accr11g01062 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 34 81 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g01062 Accr-Chr11 22163248 22170034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g01062 16 252 MADS-box Gene Family AT3G58780 63.223 9.18e-104 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Accr11g01062 K-box 1.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g01062 K09264 - gmx:732595 352.058