Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g01042 ATGGGTATACAGGGTCTTTTGCCTCAGTTGAAATCGATTATGGTCCCAATCCATATTAAGCAATTCGAGGGTTGCTATGTAGCGGTCGATACATATTCTTGGCTCCACAAAGGTGCCTTATGTTGCAGTACCGAGCTTTGCAAGGGGATACCTACATCCAGACACATTGAGTATTGCATGCGTAAAGTAAATTTGCTGCGGCACTATAATGTTAAGCCCATTCTTGTATTTGATGGAGGCCTTCTACCAATGAAGAGTGAACAAGAGAACAAGCGTGCAAGGGCGAGAAAGGAAAATCTTGCGCGTGCTGTTGAACATGAGTCACATGGAAATTCTGCTGCTGCTTTTGAGTGCTATCAGAAAGCTCTTGATATCTCACCTCTGGTTGCATGGGAACTAATTCAGGTGTTGAAGCAGGAGAATGTGGATTATCTTGTAGCTCCTTATGAGGCGGACTCCCAGATGACATTCTTGGCAGTTAGCAAACAGGTTGAAGCAGTTATAACTGAAGACTCTGATCTTATACCATTTGGTTGTCCAAGAATAATCTTTAAAATGGACAAGTTTGGTCAAGCTGTTGAGTTTCAGCATTCCATGCTACAAAAGAACAAAGAGCTTAGTTTTGAAGGGTTCACCCACCAAATGCTTCTTGAAATGTGTATATTGAGTGGTTGTGACTATCTGCAGTCCTTGCCAGGTATGGGTCTCAAAAGGGCTCATGCGATTATCAAGAGGTTCAAAAGTTATGACAAGGCTCTTAAGCATTTGAGGTTCAATGGAGTTTCTGTCCCTTCGTCTTATGAAGAATCATTCCAGAAGGCTATATTGACTTTTCAATATCAACGAGTTTATAATCCAATCAATGAAGATATTGTCCATTTATCTGATGTGCCAGCTGATATTGGTGATGACTTAGACTTCTTAGGGCCATCAATGCCAAAAGAAATAGCACAAGGGATAGCAAAAGGGAATCTTGATCCATTTACCAAAATGCCATTTCAGGTGGAGAATCTTGCTACTGGACTGGCGATGGAGAGGGCTTCAGAAATAAAAACACCACATTCCAAAGCCACAAAGAAAAAGATAGATTTACCTGTGCAGAAGAATATTTTAACCAAGTATTTTTGTTTTGCATCTCTTGAAGCAAAAAGAAAGTTCATAGCACCTCGGATGTCACCTTCTGCTACAGATCAAAGTACACCGGGTTCCTCTTCTGTGATTTCCGAGGACCATGAGACTTTGGAAACTGCTGCTCCTAAAACAAACAGCTCTGCTTCTTCCTTAGTTGACTATACAATTTTGTCCAATGTACCTCCTGTTAATAACCATGATGAAAGTGGGCTCTCCGCCAAATTTTCAGAGTTGTTGGAATCTTCACGTTTCAGTGAGGACATGGCAGGTGAGAGGCGGAAAAATCCAGAACATACTATACTGCAAAAGCCCATAGAGCCAATTCATAAACCTTGTCTGGGATTGTATAAGGAGCATAAGGATTCGAATGTCAAAGATACTAGTGAGGGAAAGACTACGGAGGCAACAAGAAAGGTCCTTGTAAGGAGTCCTTATTTTCAGCATGAACAAGTAGAAAAGGATAATTGTGACCAAAAGCCAGATTGCTTGATCAAAGATGATTTTGCCATTGATAAGCAAGGAAATACTATATCTGACCGTGCTTTAGGAAAATTCGAAGATACTATTGAGAGAAAGACTCCACCAGCAACAAGAAAGATCCTTGTAAGGAGTCCATTTTTTCAGCATGATCAAGTAGAGAATAATGATTGTGACCAAAAGCAAGAGTGTTTGGTCAAAGATGATGCTGTAATTGGTAAACACAGAAATACTATATCTGACATTGCTTTAAGCAAAGTTGAAGATAACAGAAAGACTCCTCAGGCAACAAGAAAGATCCTTGTAAGGAGTCCTTTCTTTCAGCATGAGCCAGTAGAAAAGAATAATTGTGACCAAGAGCAAGATTGTTTGGTCAAAGATGATATTGCCATTGGTGAGCCTAAAAATACCATATCTGAAAACCATAGGATGAATAAAGTTCTGAAAAGGAAGATTTCCCCTGCTGACAGTGCTCAAAGAGAAAACTTGCAGCCCGGCAACATGCATTCTGCCTCAACTCTTCCTGATAATGGTGGCTGTGATCAAAATTCTAATAGAACATTTAAAGAGGGGAATTCTGAAGAGAAGTTTGGTGCAAATATTTCCCACCTAGGCCAGTACTCAAAAATATCAGAGGAATCTTTAGAAAAGTTTACCTCAATGTTATCATCCTTCAGATACACCTCATCTGGTTCTCGTGCCAGCGGCCTCCGTGCTCCTCTGAAGGATGTTCAAAACACTTGTAAGACAAGGCCCAAACCTGTGGACTTTGAACAGTTTGCATTTGTGCCAAAAAAACAAAAGACTGACAGAGTAAGTCGAAGGGGCTGA 2439 0.4059 MGIQGLLPQLKSIMVPIHIKQFEGCYVAVDTYSWLHKGALCCSTELCKGIPTSRHIEYCMRKVNLLRHYNVKPILVFDGGLLPMKSEQENKRARARKENLARAVEHESHGNSAAAFECYQKALDISPLVAWELIQVLKQENVDYLVAPYEADSQMTFLAVSKQVEAVITEDSDLIPFGCPRIIFKMDKFGQAVEFQHSMLQKNKELSFEGFTHQMLLEMCILSGCDYLQSLPGMGLKRAHAIIKRFKSYDKALKHLRFNGVSVPSSYEESFQKAILTFQYQRVYNPINEDIVHLSDVPADIGDDLDFLGPSMPKEIAQGIAKGNLDPFTKMPFQVENLATGLAMERASEIKTPHSKATKKKIDLPVQKNILTKYFCFASLEAKRKFIAPRMSPSATDQSTPGSSSVISEDHETLETAAPKTNSSASSLVDYTILSNVPPVNNHDESGLSAKFSELLESSRFSEDMAGERRKNPEHTILQKPIEPIHKPCLGLYKEHKDSNVKDTSEGKTTEATRKVLVRSPYFQHEQVEKDNCDQKPDCLIKDDFAIDKQGNTISDRALGKFEDTIERKTPPATRKILVRSPFFQHDQVENNDCDQKQECLVKDDAVIGKHRNTISDIALSKVEDNRKTPQATRKILVRSPFFQHEPVEKNNCDQEQDCLVKDDIAIGEPKNTISENHRMNKVLKRKISPADSAQRENLQPGNMHSASTLPDNGGCDQNSNRTFKEGNSEEKFGANISHLGQYSKISEESLEKFTSMLSSFRYTSSGSRASGLRAPLKDVQNTCKTRPKPVDFEQFAFVPKKQKTDRVSRRG 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g01042 812 SMART xpgn3 1 99 IPR006085 GO:0004518
Accr11g01042 812 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
Accr11g01042 812 FunFam Exonuclease 1, putative 1 207 - -
Accr11g01042 812 Gene3D - 1 207 - -
Accr11g01042 812 SMART xpgineu 138 208 IPR006086 GO:0004518
Accr11g01042 812 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Accr11g01042 812 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 462 IPR006084 -
Accr11g01042 812 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 333 IPR036279 -
Accr11g01042 812 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Accr11g01042 812 MobiDBLite consensus disorder prediction 390 422 - -
Accr11g01042 812 MobiDBLite consensus disorder prediction 693 723 - -
Accr11g01042 812 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Accr11g01042 812 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Accr11g01042 812 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Accr11g01042 812 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Accr11g01042 812 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Accr11g01042 812 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Accr11g01042 812 ProSitePatterns XPG protein signature 2. 141 155 IPR019974 GO:0016788
Accr11g01042 812 Gene3D - 209 281 - -
Accr11g01042 812 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Accr11g01042 812 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Accr11g01042 812 MobiDBLite consensus disorder prediction 692 728 - -
Accr11g01042 812 FunFam exonuclease 1 209 281 - -
Accr11g01042 812 MobiDBLite consensus disorder prediction 392 422 - -
Accr11g01042 812 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g01042 Accr-Chr11 21539650 21546342 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g01042 1 267 Core DNA Replication Machinery Family AT5G26680 24.286 1.64e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g01042 K10746 - gmx:100798062 954.896