Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g01040 ATGCCTCGCAAGGTGAATTATGGCCTTGATTATGGTGATGATTACGATGACTATGAAGACTATGATTATGATGTTGAAATAGAAGAATATGGAGAAGAAGAAGGACGTGGACCTGAACCTGATAAAAAGCAAGGGACTAAAGGGCTTTGGAGATGCTCTATTTGCACTTACGACAATGAAGAGGGCATGAATGTATGTGACATATGTGGTGTTATGCGTCATCCTTTGGTTAACACAGGAGGTTCTGACTATAGTAAAACAGCTCCTTTCAAGTTTGATGTTCTATCCCCAGATGATGTGGTTTCTACTGGACTGCAGTCTTCCAAAAAGGGACTGAAAGGCACAGTTGCTGACAGTAGAAGTTCTGACGTTTCATCAAATATTACGGAGATTAATGAACCGAAAGTACAGTCAAATGGTGAAAGTTCAGACAGCTCATCATCTTTGGTTCAGAAGGGCAGGCATGATAGTTTTGCTAAGAGCAAGCTTTCTGAGGATGTATCATTTAATCGGGAAATAAGTGATAAAACATTAGACAGCTTATCAGCATCTTCTGGTGTGGGTAAAATGAGTAAAATCAAGTCTTCTAATGATGATAAAATTGATATTCAATCCAGTGAAGAATTATTGGATAGTTTGTCTGGACGGCTGAAAGTTAGAGACAGTGGTAGTGAAATTTATTGCTCTTCTAGTAAAGATGTCAGACCTGGAAAATCAGATAATACTATTTCTAAAGAACCTCATCCGCAAATGCCTTATAAACCTGAAAAATGGATGCTCCCTCAACAAGCTGAAGATACCTTGACTCAGCTGAATCTTGCAGTTGTTGGTCATGTCGATTCTGGGAAGTCAACACTCTCGGGTAGACTACTACACCTATCGGGACGAATTACACAAAAAGAAATGCATAAATATGAAAAAGAGGCTAAATTACAGGGTAAGGGATCCTTTGCTTATGCTTGGGCACTTGATGAAAGTTCTGAAGAAAGAGAAAGGGGAATAACTATGACAGTTGCTGTTGCATATTTTGACACCAAAAAATATCATGTTGTGGTGCTTGATTCCCCGGGCCATAAAGATTTTGTTCCAAACATGATCTCTGGGGCAACACAAGCTGACGCTGCAATCCTTGTTATTGATGCATCAATGGGTGCATATGAAGCAGGTATGGATAGTGGCAAAGGACAAACAAGGGAGCATGCACAGCTTATTAGAAGTTTTGGTGTTGACCAGGTTATTGTTGCAATAAATAAGATGGATGCTGTGGGATACTCTAAAGATCGGTTTGATTTAATTAGACAGCAATTGGGAGCGTTCCTCCGGACTTGTGGTTTTAAAGATCCTTCTGTGTCATGGATTCCCTTGAGTGTCATAGAAAATCAAAATTTGGTGGCATCTCCTTCTGATGTTCATTTCAAATCCTGGTATAAAGGACCCTATCTATTAGATGCAATTGATTCGCTTCAACCTCCAACCAGAGAATTCTCAAAGCCTCTTCTAATGCCAGTATGTGATGTCATCAAATCACCTACGCTTGGACAAGTCTCTGCTTGCGGTAAATTAGAAGCTGGAGCTCTTCGTATTGGATCAAAGGTTTTAGTTATGCCTTCAGCTGTCTTGGGGACAGTTCGCACATTGGAGCGGGATTCCAGTGCCTGCTCCATTGCAAGAGCTGGCGATAATGTATCTGTCACATTGAATGGTGTAGATGCAAGTTATGTAATGCCAGGAGGAGTATTATGTCATCCTGATTTTCCTGTTAAAGTTGCAAGTCATTTGGAGTTGAAGGTGCTTGTGTTAGAAGGTGCAAATCCTATATTGGTAGGATCGCAGTTAGAATTCCATATACACCACGCCAAGGAGCCCGCCAGAGTTTCAAAAATAGTGTCAGTACTTGATCCGAAGACTGGGAAGGCGACAAAAAAGTCCCCTCGCTGTCTCATCGCAAAGCAAAGTGCAGTTCTTGAGGTAATTTTGCAAGAGCCAGTATGTGTGCTAGAATCCTCTAGCTGTAAAGCTCTTGGAAGGGTGTCTCTAAGAGCCTTAGGAAGAACAATCGCGGTTGGACTTGTGACCCGAATAATGGGAGAGCAAGAGTGA 2100 0.4129 MPRKVNYGLDYGDDYDDYEDYDYDVEIEEYGEEEGRGPEPDKKQGTKGLWRCSICTYDNEEGMNVCDICGVMRHPLVNTGGSDYSKTAPFKFDVLSPDDVVSTGLQSSKKGLKGTVADSRSSDVSSNITEINEPKVQSNGESSDSSSSLVQKGRHDSFAKSKLSEDVSFNREISDKTLDSLSASSGVGKMSKIKSSNDDKIDIQSSEELLDSLSGRLKVRDSGSEIYCSSSKDVRPGKSDNTISKEPHPQMPYKPEKWMLPQQAEDTLTQLNLAVVGHVDSGKSTLSGRLLHLSGRITQKEMHKYEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVVLDSPGHKDFVPNMISGATQADAAILVIDASMGAYEAGMDSGKGQTREHAQLIRSFGVDQVIVAINKMDAVGYSKDRFDLIRQQLGAFLRTCGFKDPSVSWIPLSVIENQNLVASPSDVHFKSWYKGPYLLDAIDSLQPPTREFSKPLLMPVCDVIKSPTLGQVSACGKLEAGALRIGSKVLVMPSAVLGTVRTLERDSSACSIARAGDNVSVTLNGVDASYVMPGGVLCHPDFPVKVASHLELKVLVLEGANPILVGSQLEFHIHHAKEPARVSKIVSVLDPKTGKATKKSPRCLIAKQSAVLEVILQEPVCVLESSSCKALGRVSLRALGRTIAVGLVTRIMGEQE 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g01040 699 ProSitePatterns Zinc finger RanBP2-type signature. 50 69 IPR001876 -
Accr11g01040 699 ProSiteProfiles Zinc finger RanBP2 type profile. 46 75 IPR001876 -
Accr11g01040 699 Gene3D Translation factors 496 585 - -
Accr11g01040 699 Pfam Elongation factor Tu GTP binding domain 271 486 IPR000795 GO:0003924|GO:0005525
Accr11g01040 699 FunFam Elongation factor 1 alpha-like protein 261 492 - -
Accr11g01040 699 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 270 513 IPR027417 -
Accr11g01040 699 PRINTS GTP-binding elongation factor signature 367 378 IPR000795 GO:0003924|GO:0005525
Accr11g01040 699 PRINTS GTP-binding elongation factor signature 412 421 IPR000795 GO:0003924|GO:0005525
Accr11g01040 699 PRINTS GTP-binding elongation factor signature 272 285 IPR000795 GO:0003924|GO:0005525
Accr11g01040 699 PRINTS GTP-binding elongation factor signature 331 339 IPR000795 GO:0003924|GO:0005525
Accr11g01040 699 PRINTS GTP-binding elongation factor signature 351 361 IPR000795 GO:0003924|GO:0005525
Accr11g01040 699 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 268 499 IPR000795 GO:0003924|GO:0005525
Accr11g01040 699 Pfam Elongation factor Tu C-terminal domain 586 694 IPR004160 -
Accr11g01040 699 MobiDBLite consensus disorder prediction 229 253 - -
Accr11g01040 699 MobiDBLite consensus disorder prediction 103 161 - -
Accr11g01040 699 PANTHER TRANSLATION FACTOR 267 694 - -
Accr11g01040 699 Gene3D - 259 492 IPR027417 -
Accr11g01040 699 SUPERFAMILY Translation proteins 490 585 IPR009000 -
Accr11g01040 699 MobiDBLite consensus disorder prediction 103 154 - -
Accr11g01040 699 FunFam elongation factor 1-alpha isoform X4 589 698 - -
Accr11g01040 699 SMART zf_4 48 72 IPR001876 -
Accr11g01040 699 FunFam Translation elongation factor EF-1 495 585 - -
Accr11g01040 699 CDD HBS1_C_III 586 694 - -
Accr11g01040 699 CDD EF1_alpha 272 491 - -
Accr11g01040 699 SUPERFAMILY Ran binding protein zinc finger-like 47 73 IPR036443 -
Accr11g01040 699 Gene3D Translation factors 589 698 - -
Accr11g01040 699 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 592 694 IPR009001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g01040 Accr-Chr11 21527049 21534289 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g01040 46 695 Eukaryotic Initiation Factors Gene Family AT5G10630 62.290 0.0 792
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g01040 K14416 - gmx:100798594 950.273