Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g01003 ATGAACACGACCGCTAGAATCTCCGATAAAGACAAAGCAATTGCTCAGTACAGTGCTGATGCAGGGATTTTAGCCGAGTATGAACAATCTAGTGTGTCGGGTAAGTCGTTCGATTACTCAAGGTCGGTTCTTGATGCTCCAAAATCAATGTCAGACGAGAAAATGACGGCTTATTTGTCGAGAATCCAAAGAGGTGGTCTTGTTCAGCCATTTGGGTGTATGCTTGCAGTTGAAGAACCCACTTTTCGTATTATTGGGTACAGTGAGAATTGTTTTGAAATGTTGGATTTAGACGGAAAATTTCATTCAAAACGATTTGTTAGTTTAGTTGGAGTTGATGCTACTACTCTATTCACGCCTTCTTCAGGGGCTTCTCTTGCAAAAGCTTCGGCTTCGAGGGAAATTTCGCTACTAAACCCCATTTGGGTCTGTTCTAGAACGACCCAGAAGCCTTTTTATGCTATAATGCATCGAATTGATGTGGGGATTGTAATTGATTTGGAGCCTGCAAGGTCTAGTGATCAAGCATTGTCACTTGCTGGCGCCGTACAGTCTCAGAAACTAGCTGTACGGGCAATTTCAAGGCTGCAATCTCTTCCCGGGGGAGATATTGGAGCTTTGTGTGATACTGTTGTTGAAGAAGTTCAAAAGCTCACTGGATATGACAGGGTTATGGTATATAAGTTCCATAAGGATGATCATGGGGAAGTTGTGTCTGAAATCAGAAGGTCAGATTTAGAACCCTTTTTGGGTTTGCATTACCCTGCCACGGATATCCCTCAAGCTGCTCGCTTCTTGTTGAAGCAGAATAGAGTCAGGTTGATCTGTGATTGCCATGCAAAACCCGTTAAGGTGATTCAAAGTGAAGAATTAAGGCAGCCTCTTTGCTTGGTCAATTCTACCCTTAGGTCACCACATCAATGTCATGCACAGTACATGGAAAACATGGGCTCAATTGCTTCTCTAGTTATGGCTGTTATTGTCAATGGAAATGATACCACAAAGCTATGGGGTTTGCTTGTTTGTCACCACACTTCGCCACGTCATGTCCCCTTCCCGCTTCGCTATGCTTGTGAGTTCCTAGTGCAGGCTTTTGGATTGCAGCTGTACATGGAGATGCAATTGGCATTACAGATGGCAGAGAAGAGAACTCTTAAAACCCAAACCTTACTATGTGACATGCTTCTCCGTGATGCTCCTTTTAGTATTGTTACACAATCTCCTAGCATAATGGACCTTGTGAAGTGTGATGGTGCTGCACTGCTTTTTGGTGGAAACTGTTGGCTATTAGGCACAACCCCAACTGAATCACAGGTAAAAGACATTGCAGAATGGCTACTTAGTAGTCATGGGGACTCAACTGGTTTGAGCACAGATAGTTTGGCTGATGCCGGTTACCCTGATGCTGCTTCACTGGGGGATGCAGTTTGTGGCATGGCAACAGCAAGGATCAATTCAAGAGATTTTTTGTTCTGGTTCAGGTCTCATGCTGCTAAGGAGATCAAATGGGGAGGAGCCAAGCACCATCCAGAGGATAAAGATGATGGAGGAAAGATGAATCCTAGACTTTCATTTAAAGCATTTCTTGAAGTAGTAAAAAGCAAAAGTGTGCCATGGGAAGCGTCAGAAATCAATTCTATTCACTCATTACAGCTTATAATGAGAGATTCATTCCAAGATGCAGAGAACTGTGGTCCTAAGGCTCTAGCTCATGTGAAGCAAAAGGACTCTGGTATGGGAGGGAATGAACTCAGTTCAGTGGCATTTGAAATGGTTAGATTGATTGAAACAGCAACAGTTCCAATTTTTGGGGTTGATTCAGCTGGTATAATCAATGGATGGAATGCCAAAATTGCTGAACTGACAGGTCTACAAACCAGTGAAGCTATGGGACGATCCCTTGTAAATGAAGTTGTCGTTGAGGACTCACGGGAAACTGTTGATAATATTCTAAAAAGAGCCCTGGAAGGTCAGGAGGACAAAAATGTTGAGTTGAAACTAAAACACTTTGGTCCGCATCAGCAAAAATCAGTTGTATATATTATGGCCAATGCCTGCACAAGTAGGGATTACAAAAATGCTGTTGTTGGGGTCTGCTTTGTGGGTCAAGACATCACTCATGAGAAATCTGTTCTTGATAAATTTATCAAGTTGGAAGGTGATTACAAAGCTATCATACAGAGTCCCAACCCACTAATTCCTCCCATATTTGCTTCAGATGAGAATGCCTGTTGTTCTGAATGGAATACAGCCATGGAAAGGCTAACCGGTTGGCAGAGAGATGAAGTTATTGGGAAAATGCTTCCTGGGGAGATCTTTGGAGGTTTATGTCGGTTGAAAAGCCACGATACGCTTACTAGTTTCACAATTTTATTGTATCAAGGAATCAGTGGCCAAGATTCTGAGAAGTTCCCAATTAGATTTTTTAATAGAAAGGAGAAACTTGTGGAGGTTTTCTTGACAGTGAACAGGAGGATTGATGCAGCTGGTAAAATAATTGGCTGTTTCTGTTTCTTGCAGATTATACCGCCAGACCTGCATCGACCCTCAGAAGAACAAAGGTCACAACACAGGGGAACTCTTTCTGAATCCAAGGAATTAGATTATATACTACAAGAGATAAAGAATCCTTTAAATGGTATGCGTTTCACACAAAATCTCCTGCAGAATACAGCTGTCTCAGAAAATCAGAAACAGTTTCTTGATAATAGCAATGCTTGTGAGAGACAAATTATGACAATTATTGAGGATGCGGATTTTGGAAGTATTGATGAAGGAACTTTGAAGCTAAAAATGGAGGAGTTTCTTCTGGGAAATATCATAGATGCCATAGTCAGTCAAGTCATGATCATGATAAGAGAAAGAAACTTGCGGCTCTTTCATGAAATTCCTGATGAAATCAAAACACTCACTCTATTTGGTGATCAAATAAGGCTTCAGGTGGTCTTGTCTGATATTTTGATTAATGTGGTCTGCCACACACCATCTCCCAATGGCTGGGTAGAAATAAAGATTTCACCTGGGCTGAAGATAATACAGGATGGAAGTGAGTTCATTCATCTGCAGTTCAGAATGACCCATGCCGGTGAAGGTCTTCCTTCTGAAATTCTTCAGGAAATGTTTGAAGGAGGGAATCAATGGACTACACAGGAAGGTCTAGGGCTATACATGTCGAGAAAACTCCTCATAAAGATGAATGGCCATGTCCACTATGTAAGAGAAAAAAACATGTGTTACTTCCTCATTGATATTCAACTTAGAACAAGAAAAGAAAGGCAGAGGATTTTTCAAGCGTTAGACACGAGCATGTTATCTTAA 3318 0.4162 MNTTARISDKDKAIAQYSADAGILAEYEQSSVSGKSFDYSRSVLDAPKSMSDEKMTAYLSRIQRGGLVQPFGCMLAVEEPTFRIIGYSENCFEMLDLDGKFHSKRFVSLVGVDATTLFTPSSGASLAKASASREISLLNPIWVCSRTTQKPFYAIMHRIDVGIVIDLEPARSSDQALSLAGAVQSQKLAVRAISRLQSLPGGDIGALCDTVVEEVQKLTGYDRVMVYKFHKDDHGEVVSEIRRSDLEPFLGLHYPATDIPQAARFLLKQNRVRLICDCHAKPVKVIQSEELRQPLCLVNSTLRSPHQCHAQYMENMGSIASLVMAVIVNGNDTTKLWGLLVCHHTSPRHVPFPLRYACEFLVQAFGLQLYMEMQLALQMAEKRTLKTQTLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALLFGGNCWLLGTTPTESQVKDIAEWLLSSHGDSTGLSTDSLADAGYPDAASLGDAVCGMATARINSRDFLFWFRSHAAKEIKWGGAKHHPEDKDDGGKMNPRLSFKAFLEVVKSKSVPWEASEINSIHSLQLIMRDSFQDAENCGPKALAHVKQKDSGMGGNELSSVAFEMVRLIETATVPIFGVDSAGIINGWNAKIAELTGLQTSEAMGRSLVNEVVVEDSRETVDNILKRALEGQEDKNVELKLKHFGPHQQKSVVYIMANACTSRDYKNAVVGVCFVGQDITHEKSVLDKFIKLEGDYKAIIQSPNPLIPPIFASDENACCSEWNTAMERLTGWQRDEVIGKMLPGEIFGGLCRLKSHDTLTSFTILLYQGISGQDSEKFPIRFFNRKEKLVEVFLTVNRRIDAAGKIIGCFCFLQIIPPDLHRPSEEQRSQHRGTLSESKELDYILQEIKNPLNGMRFTQNLLQNTAVSENQKQFLDNSNACERQIMTIIEDADFGSIDEGTLKLKMEEFLLGNIIDAIVSQVMIMIRERNLRLFHEIPDEIKTLTLFGDQIRLQVVLSDILINVVCHTPSPNGWVEIKISPGLKIIQDGSEFIHLQFRMTHAGEGLPSEILQEMFEGGNQWTTQEGLGLYMSRKLLIKMNGHVHYVREKNMCYFLIDIQLRTRKERQRIFQALDTSMLS 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g01003 1105 FunFam Phytochrome 734 842 - -
Accr11g01003 1105 Gene3D PAS domain 588 717 - -
Accr11g01003 1105 SMART pas_2 589 656 IPR000014 -
Accr11g01003 1105 SMART pas_2 720 790 IPR000014 -
Accr11g01003 1105 SMART HKATPase_4 974 1088 IPR003594 -
Accr11g01003 1105 Pfam PAS fold 57 170 IPR013654 GO:0006355
Accr11g01003 1105 Pfam PAS fold 590 705 IPR013767 GO:0006355
Accr11g01003 1105 Pfam PAS fold 721 842 IPR013767 GO:0006355
Accr11g01003 1105 Pfam Phytochrome region 386 561 IPR013515 GO:0006355|GO:0009584
Accr11g01003 1105 SUPERFAMILY GAF domain-like 381 559 - -
Accr11g01003 1105 ProSiteProfiles PAC domain profile. 661 717 IPR000700 -
Accr11g01003 1105 ProSiteProfiles Histidine kinase domain profile. 869 1088 IPR005467 -
Accr11g01003 1105 SMART HisKA_10 862 926 IPR003661 GO:0000155|GO:0007165
Accr11g01003 1105 Gene3D PAS domain 61 306 - -
Accr11g01003 1105 FunFam Phytochrome 378 508 - -
Accr11g01003 1105 ProSitePatterns Phytochrome chromophore attachment site signature. 303 312 IPR013516 -
Accr11g01003 1105 ProSiteProfiles PAS repeat profile. 587 658 IPR000014 -
Accr11g01003 1105 Gene3D - 378 551 IPR043150 -
Accr11g01003 1105 SUPERFAMILY PYP-like sensor domain (PAS domain) 593 701 IPR035965 -
Accr11g01003 1105 SUPERFAMILY GAF domain-like 183 369 - -
Accr11g01003 1105 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 974 1075 IPR003594 -
Accr11g01003 1105 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 930 1076 IPR036890 -
Accr11g01003 1105 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 203 363 IPR016132 -
Accr11g01003 1105 SUPERFAMILY PYP-like sensor domain (PAS domain) 62 172 IPR035965 -
Accr11g01003 1105 Pfam GAF domain 203 372 IPR003018 GO:0005515
Accr11g01003 1105 Gene3D - 184 534 IPR029016 -
Accr11g01003 1105 ProSiteProfiles PAS repeat profile. 718 773 IPR000014 -
Accr11g01003 1105 CDD PAS 732 840 IPR000014 -
Accr11g01003 1105 FunFam Phytochrome 583 715 - -
Accr11g01003 1105 NCBIfam PAS domain S-box protein 594 709 IPR000014 -
Accr11g01003 1105 PRINTS Phytochrome signature 609 624 IPR001294 GO:0006355|GO:0009584
Accr11g01003 1105 PRINTS Phytochrome signature 303 324 IPR001294 GO:0006355|GO:0009584
Accr11g01003 1105 PRINTS Phytochrome signature 703 723 IPR001294 GO:0006355|GO:0009584
Accr11g01003 1105 PRINTS Phytochrome signature 218 237 IPR001294 GO:0006355|GO:0009584
Accr11g01003 1105 PRINTS Phytochrome signature 521 539 IPR001294 GO:0006355|GO:0009584
Accr11g01003 1105 PRINTS Phytochrome signature 118 140 IPR001294 GO:0006355|GO:0009584
Accr11g01003 1105 PRINTS Phytochrome signature 488 507 IPR001294 GO:0006355|GO:0009584
Accr11g01003 1105 PRINTS Phytochrome signature 590 606 IPR001294 GO:0006355|GO:0009584
Accr11g01003 1105 PRINTS Phytochrome signature 683 700 IPR001294 GO:0006355|GO:0009584
Accr11g01003 1105 PRINTS Phytochrome signature 403 423 IPR001294 GO:0006355|GO:0009584
Accr11g01003 1105 Gene3D - 904 1079 IPR036890 -
Accr11g01003 1105 PANTHER OS08G0260000 PROTEIN 54 923 - -
Accr11g01003 1105 PIRSF Phytochrome_conventional 1 1095 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Accr11g01003 1105 Gene3D PAS domain 734 843 - -
Accr11g01003 1105 SMART gaf_1 203 383 IPR003018 GO:0005515
Accr11g01003 1105 CDD HisKA 862 917 IPR003661 GO:0000155|GO:0007165
Accr11g01003 1105 CDD HATPase_Phy-like 973 1086 IPR044767 -
Accr11g01003 1105 CDD PAS 598 705 IPR000014 -
Accr11g01003 1105 SUPERFAMILY PYP-like sensor domain (PAS domain) 735 837 IPR035965 -
Accr11g01003 1105 Pfam His Kinase A (phospho-acceptor) domain 866 926 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g01003 Accr-Chr11 20277641 20284118 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g01003 15 1088 Histidine Kinase Gene Family AT4G18130 63.385 0.0 1445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g01003 K12123 - gmx:100808192 1760.35