Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g01002 ATGACTAGCAAAGGAAGCAGAGATATAAAGATGGAGGAGACCTCGCCTTCTTCCTCCTCCTCTGCTTCACCTGCGATCAAAATGAACACGACCGCTAGAATCTCCGATAAAGACAAAGCAATTGCTCAGTACAGTGCTGATGCAGGGATTTTAGCCGAGTATGAACAATCTAGTGTGTCGGGTAAGTCGTTCGATTACTCAAGGTCGGTTCTTGATGCTCCAAAATCAATGTCAGACGAGAAAATGACGGCTTATTTGTCGAGAATCCAAAGAGGTGGTCTTGTTCAGCCATTTGGGTGTATGCTTGCAGTTGAAGAACCCACTTTTCGTATTATTGGGTACAGTGAGAATTGTTTTGAAATGTTGGATTTAGACGGAAAATTTCATTCAAAACGATTTGTTAGTTTAGTTGGAGTTGATGCTACTACTCTATTCACGCCTTCTTCAGGGGCTTCTCTTGCAAAAGCTTCGGCTTCGAGGGAAATTTCGCTACTAAACCCCATTTGGGTCTGTTCTAGAACGACCCAGAAGCCTTTTTATGCTATAATGCATCGAATTGATGTGGGGATTGTAATTGATTTGGAGCCTGCAAGGTCTAGTGATCAAGCATTGTCACTTGCTGGCGCCGTACAGTCTCAGAAACTAGCTGTACGGGCAATTTCAAGGCTGCAATCTCTTCCCGGGGGAGATATTGGAGCTTTGTGTGATACTGTTGTTGAAGAAGTTCAAAAGCTCACTGGATATGACAGGGTTATGGTATATAAGTTCCATAAGGATGATCATGGGGAAGTTGTGTCTGAAATCAGAAGGTCAGATTTAGAACCCTTTTTGGGTTTGCATTACCCTGCCACGGATATCCCTCAAGCTGCTCGCTTCTTGTTGAAGCAGAATAGAGTCAGGTTGATCTGTGATTGCCATGCAAAACCCGTTAAGGTGATTCAAAGTGAAGAATTAAGGCAGCCTCTTTGCTTGGTCAATTCTACCCTTAGGTCACCACATCAATGTCATGCACAGTACATGGAAAACATGGGCTCAATTGCTTCTCTAGTTATGGCTGTTATTGTCAATGGAAATGATACCACAAAGCTATGGGGTTTGCTTGTTTGTCACCACACTTCGCCACGTCATGTCCCCTTCCCGCTTCGCTATGCTTGTGAGTTCCTAGTGCAGGCTTTTGGATTGCAGCTGTACATGGAGATGCAATTGGCATTACAGATGGCAGAGAAGAGAACTCTTAAAACCCAAACCTTACTATGTGACATGCTTCTCCGTGATGCTCCTTTTAGTATTGTTACACAATCTCCTAGCATAATGGACCTTGTGAAGTGTGATGGTGCTGCACTGCTTTTTGGTGGAAACTGTTGGCTATTAGGCACAACCCCAACTGAATCACAGGTAAAAGACATTGCAGAATGGCTACTTAGTAGTCATGGGGACTCAACTGGTTTGAGCACAGATAGTTTGGCTGATGCCGGTTACCCTGATGCTGCTTCACTGGGGGATGCAGTTTGTGGCATGGCAACAGCAAGGATCAATTCAAGAGATTTTTTGTTCTGGTTCAGGTCTCATGCTGCTAAGGAGATCAAATGGGGAGGAGCCAAGCACCATCCAGAGGATAAAGATGATGGAGGAAAGATGAATCCTAGACTTTCATTTAAAGCATTTCTTGAAGTAGTAAAAAGCAAAAGTGTGCCATGGGAAGCGTCAGAAATCAATTCTATTCACTCATTACAGCTTATAATGAGAGATTCATTCCAAGATGCAGAGAACTGTGGTCCTAAGGCTCTAGCTCATGTGAAGCAAAAGGACTCTGGTATGGGAGGGAATGAACTCAGTTCAGTGGCATTTGAAATGGTTAGATTGATTGAAACAGCAACAGTTCCAATTTTTGGGGTTGATTCAGCTGGTATAATCAATGGATGGAATGCCAAAATTGCTGAACTGACAGGTCTACAAACCAGTGAAGCTATGGGACGATCCCTTGTAAATGAAGTTGTCGTTGAGGACTCACGGGAAACTGTTGATAATATTCTAAAAAGAGCCCTGGAAGGTCAGGAGGACAAAAATGTTGAGTTGAAACTAAAACACTTTGGTCCGCATCAGCAAAAATCAGTTGTATATATTATGGCCAATGCCTGCACAAGTAGGGATTACAAAAATGCTGTTGTTGGGGTCTGCTTTGTGGGTCAAGACATCACTCATGAGAAATCTGTTCTTGATAAATTTATCAAGTTGGAAGGTGATTACAAAGCTATCATACAGAGTCCCAACCCACTAATTCCTCCCATATTTGCTTCAGATGAGAATGCCTGTTGTTCTGAATGGAATACAGCCATGGAAAGGCTAACCGGTTGGCAGAGAGATGAAGTTATTGGGAAAATGCTTCCTGGGGAGATCTTTGGAGGTTTATGTCGGTTGAAAAGCCACGATACGCTTACTAGTTTCACAATTTTATTGTATCAAGGAATCAGTGGCCAAGATTCTGAGAAGTTCCCAATTAGATTTTTTAATAGAAAGGAGAAACTTGTGGAGGTTTTCTTGACAGTGAACAGGAGGATTGATGCAGCTGGTAAAATAATTGGCTGTTTCTGTTTCTTGCAGATTATACCGCCAGACCTGCATCGACCCTCAGAAGAACAAAGGTCACAACACAGGGGAACTCTTTCTGAATCCAAGGAATTAGATTATATACTACAAGAGATAAAGAATCCTTTAAATGGTATGCGTTTCACACAAAATCTCCTGCAGAATACAGCTGTCTCAGAAAATCAGAAACAGTTTCTTGATAATAGCAATGCTTGTGAGAGACAAATTATGACAATTATTGAGGATGCGGATTTTGGAAGTATTGATGAAGGAACTTTGAAGCTAAAAATGGAGGAGTTTCTTCTGGGAAATATCATAGATGCCATAGTCAGTCAAGTCATGATCATGATAAGAGAAAGAAACTTGCGGCTCTTTCATGAAATTCCTGATGAAATCAAAACACTCACTCTATTTGGTGATCAAATAAGGCTTCAGGTGGTCTTGTCTGATATTTTGATTAATGTGGTCTGCCACACACCATCTCCCAATGGCTGGGTAGAAATAAAGATTTCACCTGGGCTGAAGATAATACAGGATGGAAGTGAGTTCATTCATCTGCAGTTCAGAATGACCCATGCCGGTGAAGGTCTTCCTTCTGAAATTCTTCAGGAAATGTTTGAAGGAGGGAATCAATGGACTACACAGGAAGGTCTAGGGCTATACATGTCGAGAAAACTCCTCATAAAGATGAATGGCCATGTCCACTATGTAAGAGAAAAAAACATGTGTTACTTCCTCATTGATATTCAACTTAGAACAAGAAAAGAAAGGCAGAGGATTTTTCAAGCGTTAGACACGAGCATGTTATCTTAA 3399 0.4178 MTSKGSRDIKMEETSPSSSSSASPAIKMNTTARISDKDKAIAQYSADAGILAEYEQSSVSGKSFDYSRSVLDAPKSMSDEKMTAYLSRIQRGGLVQPFGCMLAVEEPTFRIIGYSENCFEMLDLDGKFHSKRFVSLVGVDATTLFTPSSGASLAKASASREISLLNPIWVCSRTTQKPFYAIMHRIDVGIVIDLEPARSSDQALSLAGAVQSQKLAVRAISRLQSLPGGDIGALCDTVVEEVQKLTGYDRVMVYKFHKDDHGEVVSEIRRSDLEPFLGLHYPATDIPQAARFLLKQNRVRLICDCHAKPVKVIQSEELRQPLCLVNSTLRSPHQCHAQYMENMGSIASLVMAVIVNGNDTTKLWGLLVCHHTSPRHVPFPLRYACEFLVQAFGLQLYMEMQLALQMAEKRTLKTQTLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALLFGGNCWLLGTTPTESQVKDIAEWLLSSHGDSTGLSTDSLADAGYPDAASLGDAVCGMATARINSRDFLFWFRSHAAKEIKWGGAKHHPEDKDDGGKMNPRLSFKAFLEVVKSKSVPWEASEINSIHSLQLIMRDSFQDAENCGPKALAHVKQKDSGMGGNELSSVAFEMVRLIETATVPIFGVDSAGIINGWNAKIAELTGLQTSEAMGRSLVNEVVVEDSRETVDNILKRALEGQEDKNVELKLKHFGPHQQKSVVYIMANACTSRDYKNAVVGVCFVGQDITHEKSVLDKFIKLEGDYKAIIQSPNPLIPPIFASDENACCSEWNTAMERLTGWQRDEVIGKMLPGEIFGGLCRLKSHDTLTSFTILLYQGISGQDSEKFPIRFFNRKEKLVEVFLTVNRRIDAAGKIIGCFCFLQIIPPDLHRPSEEQRSQHRGTLSESKELDYILQEIKNPLNGMRFTQNLLQNTAVSENQKQFLDNSNACERQIMTIIEDADFGSIDEGTLKLKMEEFLLGNIIDAIVSQVMIMIRERNLRLFHEIPDEIKTLTLFGDQIRLQVVLSDILINVVCHTPSPNGWVEIKISPGLKIIQDGSEFIHLQFRMTHAGEGLPSEILQEMFEGGNQWTTQEGLGLYMSRKLLIKMNGHVHYVREKNMCYFLIDIQLRTRKERQRIFQALDTSMLS 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g01002 1132 Gene3D PAS domain 88 333 - -
Accr11g01002 1132 PIRSF Phytochrome_conventional 13 1122 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Accr11g01002 1132 ProSiteProfiles PAS repeat profile. 745 800 IPR000014 -
Accr11g01002 1132 SUPERFAMILY GAF domain-like 210 396 - -
Accr11g01002 1132 Pfam Phytochrome region 413 588 IPR013515 GO:0006355|GO:0009584
Accr11g01002 1132 Pfam GAF domain 230 399 IPR003018 GO:0005515
Accr11g01002 1132 CDD PAS 759 867 IPR000014 -
Accr11g01002 1132 Pfam PAS fold 617 732 IPR013767 GO:0006355
Accr11g01002 1132 Pfam PAS fold 748 869 IPR013767 GO:0006355
Accr11g01002 1132 Pfam PAS fold 84 197 IPR013654 GO:0006355
Accr11g01002 1132 Pfam His Kinase A (phospho-acceptor) domain 893 953 IPR003661 GO:0000155|GO:0007165
Accr11g01002 1132 Gene3D PAS domain 615 744 - -
Accr11g01002 1132 SMART HisKA_10 889 953 IPR003661 GO:0000155|GO:0007165
Accr11g01002 1132 MobiDBLite consensus disorder prediction 1 28 - -
Accr11g01002 1132 MobiDBLite consensus disorder prediction 12 28 - -
Accr11g01002 1132 FunFam Phytochrome 610 742 - -
Accr11g01002 1132 SUPERFAMILY PYP-like sensor domain (PAS domain) 762 864 IPR035965 -
Accr11g01002 1132 SUPERFAMILY PYP-like sensor domain (PAS domain) 620 728 IPR035965 -
Accr11g01002 1132 SUPERFAMILY GAF domain-like 408 586 - -
Accr11g01002 1132 ProSiteProfiles PAS repeat profile. 614 685 IPR000014 -
Accr11g01002 1132 PANTHER OS08G0260000 PROTEIN 81 950 - -
Accr11g01002 1132 FunFam Phytochrome 761 869 - -
Accr11g01002 1132 ProSiteProfiles PAC domain profile. 688 744 IPR000700 -
Accr11g01002 1132 FunFam Phytochrome 405 535 - -
Accr11g01002 1132 ProSiteProfiles Histidine kinase domain profile. 896 1115 IPR005467 -
Accr11g01002 1132 SMART HKATPase_4 1001 1115 IPR003594 -
Accr11g01002 1132 NCBIfam PAS domain S-box protein 621 736 IPR000014 -
Accr11g01002 1132 Gene3D - 211 561 IPR029016 -
Accr11g01002 1132 Gene3D - 931 1106 IPR036890 -
Accr11g01002 1132 Gene3D - 405 578 IPR043150 -
Accr11g01002 1132 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 957 1103 IPR036890 -
Accr11g01002 1132 SMART gaf_1 230 410 IPR003018 GO:0005515
Accr11g01002 1132 CDD PAS 625 732 IPR000014 -
Accr11g01002 1132 ProSitePatterns Phytochrome chromophore attachment site signature. 330 339 IPR013516 -
Accr11g01002 1132 CDD HATPase_Phy-like 1000 1113 IPR044767 -
Accr11g01002 1132 SMART pas_2 747 817 IPR000014 -
Accr11g01002 1132 SMART pas_2 616 683 IPR000014 -
Accr11g01002 1132 PRINTS Phytochrome signature 710 727 IPR001294 GO:0006355|GO:0009584
Accr11g01002 1132 PRINTS Phytochrome signature 548 566 IPR001294 GO:0006355|GO:0009584
Accr11g01002 1132 PRINTS Phytochrome signature 636 651 IPR001294 GO:0006355|GO:0009584
Accr11g01002 1132 PRINTS Phytochrome signature 330 351 IPR001294 GO:0006355|GO:0009584
Accr11g01002 1132 PRINTS Phytochrome signature 515 534 IPR001294 GO:0006355|GO:0009584
Accr11g01002 1132 PRINTS Phytochrome signature 730 750 IPR001294 GO:0006355|GO:0009584
Accr11g01002 1132 PRINTS Phytochrome signature 245 264 IPR001294 GO:0006355|GO:0009584
Accr11g01002 1132 PRINTS Phytochrome signature 430 450 IPR001294 GO:0006355|GO:0009584
Accr11g01002 1132 PRINTS Phytochrome signature 617 633 IPR001294 GO:0006355|GO:0009584
Accr11g01002 1132 PRINTS Phytochrome signature 145 167 IPR001294 GO:0006355|GO:0009584
Accr11g01002 1132 CDD HisKA 889 944 IPR003661 GO:0000155|GO:0007165
Accr11g01002 1132 Gene3D PAS domain 761 870 - -
Accr11g01002 1132 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 230 390 IPR016132 -
Accr11g01002 1132 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1001 1102 IPR003594 -
Accr11g01002 1132 SUPERFAMILY PYP-like sensor domain (PAS domain) 89 199 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g01002 Accr-Chr11 20277641 20284199 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g01002 13 1115 Histidine Kinase Gene Family AT4G18130 62.276 0.0 1449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g01002 K12123 - gmx:100808192 1761.89