Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00983 ATGGAGAATATCGGCGAAGAGTACAGGCATTACTGGGAAACCATCCGCTTCCTTCAAACCGAAGAGCTTGACAGTTGGGGATGGGACGAGGCCTTCTCTGGTTACTATGATTCCAGCTCCCCTGACGGCGCTGCCTCATCCGCCGCCTCCAAGAACATTGTCTCTGAGCGCAATGGCCGCAAGAAGCTCAACGAGAGACTCTTCGCTCTCAGAGTTGTCGTCCCCAACATTAGCAAGATGGATAAGGCTTCCATAATCAAGGACGCAATCGATTACATCCATCACTTGCACGAACAGGAGAGGAATATTGAGGCGGAGATATCGGAGCTTGAATCTGGGAAACAGATCAAGCAAAACTCGAGCGATATCGATTACGAGCAAGACCTTCCTGTGTTGCTCAGGTCCAAGAAGAAGAAAACATAA 423 0.4965 MENIGEEYRHYWETIRFLQTEELDSWGWDEAFSGYYDSSSPDGAASSAASKNIVSERNGRKKLNERLFALRVVVPNISKMDKASIIKDAIDYIHHLHEQERNIEAEISELESGKQIKQNSSDIDYEQDLPVLLRSKKKKT 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00983 140 Gene3D - 43 113 IPR036638 GO:0046983
Accr11g00983 140 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 46 120 - -
Accr11g00983 140 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 43 117 - -
Accr11g00983 140 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Accr11g00983 140 Pfam Helix-loop-helix DNA-binding domain 54 97 IPR011598 GO:0046983
Accr11g00983 140 SMART finulus 53 102 IPR011598 GO:0046983
Accr11g00983 140 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 112 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00983 Accr-Chr11 19966153 19966751 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00983 1 139 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 62.676 2.99e-50 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr11g00983 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00983 - - pcin:129308076 259.225