Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00965 ATGGCTGACGGAATTCCAATTCTTCCCGATGACATGATCCAAAACATTCTGGAACGACTTCCGGTAAAATCGTTAATGCGATTCCAATGTGTGTGCAGACAATGGAGAATTCTCTTCAAGACCCAATATTTCATCACAAATCACCTCCACCACTCAAATCATCAAAACCCTTGTCTCCTTCTCCAACGTTATGGCATAGATAATCCTTCAAACTTTTATTGCCTTGATTCCGAGATGCAAGTTTCGGAACTTCAGAAGCCACCGTTGCTCAATTCTTTGAAGCGAGGTGAGATAATTGGTTCCAGCAATGGCTTGCTCTGTGTTGAAATAAATAAGCATGATCCATATTATCATCTCCTTTTAGTGTGGAATCCAGCTATTAGAGAGGTCAGGCGAGTGCCCGAAACTAAATTTCATGAGGATTATCGTAACTATCTTATAGGATTTGGGTTCTGTCCAATTACTAATGATTACAAGATAGTGATAACTTATTCTTCGGGGCTTTATGCTGATCTTTCTGCTGTGAAAGTGTATTCTTTGAGTACAGGGGCATGGAGGGAAGTAGAATTGAGGCTCAATGACACCGTACGTCTAAATTCTCGGAGTGTCACTGTCAATGGTGTTATGTTTTGGTTGGTGTTAAAGAGGTTTGAGGAGTATACTGAGAATCGGATTGTTTCATTTGACTTAGAAGCGGAAGAGTTCACAGTGATTACAATACCTGAGCTACAGCCTATTAAGCTTACTGTGTATGAGGAAAAACTTGTTATATTTTCTGAGAATAAAAACTCAGAACATTCTGCTATTGATATGTGGGTAATGGAGGAGGGTGTAGGCGCATCTGGAGAGAGATGGGGTTGGACCAAAAAATATACTAGCAGCCCTAATCCTTGCTTATTGAATCCTACTTGCTTCTTAAATCTTACTACTATTTGGAGAAATGAAATTGTTTTTTGTCCTCCGGGGGAGGAAGAATCAACGGTTCTCTTAAATCCCACTACTGGAGAAATGAAGAAGTTTGCAATTAGCAAATGTGACTATGGGTATTGTAGATCCAATTATGCTGAAAGTCTTGTACGAGTTGAGGAATGA 1092 0.3974 MADGIPILPDDMIQNILERLPVKSLMRFQCVCRQWRILFKTQYFITNHLHHSNHQNPCLLLQRYGIDNPSNFYCLDSEMQVSELQKPPLLNSLKRGEIIGSSNGLLCVEINKHDPYYHLLLVWNPAIREVRRVPETKFHEDYRNYLIGFGFCPITNDYKIVITYSSGLYADLSAVKVYSLSTGAWREVELRLNDTVRLNSRSVTVNGVMFWLVLKRFEEYTENRIVSFDLEAEEFTVITIPELQPIKLTVYEEKLVIFSENKNSEHSAIDMWVMEEGVGASGERWGWTKKYTSSPNPCLLNPTCFLNLTTIWRNEIVFCPPGEEESTVLLNPTTGEMKKFAISKCDYGYCRSNYAESLVRVEE 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00965 363 Pfam F-box domain 8 42 IPR001810 GO:0005515
Accr11g00965 363 Pfam F-box associated domain 203 319 IPR013187 -
Accr11g00965 363 ProSiteProfiles F-box domain profile. 2 48 IPR001810 GO:0005515
Accr11g00965 363 SUPERFAMILY Galactose oxidase, central domain 98 340 IPR011043 -
Accr11g00965 363 SMART fbox_2 8 48 IPR001810 GO:0005515
Accr11g00965 363 NCBIfam F-box protein interaction domain 103 324 IPR017451 -
Accr11g00965 363 SUPERFAMILY F-box domain 3 61 IPR036047 GO:0005515
Accr11g00965 363 Gene3D - 7 43 - -
Accr11g00965 363 CDD F-box_AtFBW1-like 6 44 - -
Accr11g00965 363 PANTHER BNACNNG10540D PROTEIN 7 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00965 Accr-Chr11 19356565 19357656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00965 139 306 Carbohydrate Esterase AT1G25141 23.121 1.59e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00965 - - pcin:129286166 403.29