Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00960 ATGAGGGAGAAGGGAGTGAATAGCGACATTCCATTTCTTCCCCAAGAAATCATCGGAAACATTCTTAAACGACTTCCGGCAAAAACCCTAATCCGATTCCAATGTGTGTGCAGAGAATGGAGAAATCTCTTCAGGACCAAATCTTTCATCGCCGATCACCTTGGCCACTCAAATCATCAAAACCCTTGTCTCCTTTTCCATTGTTGTGACTGGTGTGATTCTCGGAACTTGTATTGCCTTGATTCCGAGATGCAAGTTTGGGAATTTCCGAAACCACCATTGCATGATTATCTGAAGCCATATAAGATCGTTGGGTCCTGCAATGGCTTGCTCTGTGTTCAAAGCAATGATTCTCATGTATCTCCTCATCCCCTTTTAGTGTGGAATCCCTCTATTAGAGAGGTCAGGCCTGTGCCCGCATTTAATTTTCATCAGGATTATGAGGATTATAATATAGGATTTGGTTTCAGCCCGATTATTAATGATTACAAGATAGTGATAGCTTCTCAGTGTTATACTGGGATTTCTGCTGTGCAAGTGTATTCTTTAATCTCAGGGTCATGGAGGGAAGTAAAATTTAGCCTCAATTGTACGGAATGTCTTAGTGATGAAAGCGTCACTGTTAATGGTATTATGTTTTGGTTGGGATCAAAGCGGGTTGGGAAAGATACAGATGACCATGAGGTTCAGATTGTTTCATTTGACTTAGCAAATGAAGTGTTTACATCAATAGCAATACCCGAGCTACCCGGTTGGACAACGCTTACTGTGTATGAGGAAAAAGTTGCTCTTGTTTCTTACATGACAAACTCAGAACTTTCTGTTCATCTGTGGGTAATGGAGGAGGGTGTGCATGCATCCGGGGAGATATGGAGTTGGACTAAGAGATATACTAGCAACCCTTATCCATGCTGGTTATATCTAGAGACAATTTGGAGAAATGAGATTGTTTGCATTGCTAACATTGAGAATAAACGAACAGCTGTTCTCTTCAATCCCACTACTAAAAGAATCAAGAAGCATGTTATTAGCAAATGTGTCTGTTATCCTGATATTTTCAACTATGCTGAAAGTCTTGTCCCGGTTGGAGGAATGAAATCATTACAAATTTTCTGTATGGCTTCGACTCATTGA 1134 0.4056 MREKGVNSDIPFLPQEIIGNILKRLPAKTLIRFQCVCREWRNLFRTKSFIADHLGHSNHQNPCLLFHCCDWCDSRNLYCLDSEMQVWEFPKPPLHDYLKPYKIVGSCNGLLCVQSNDSHVSPHPLLVWNPSIREVRPVPAFNFHQDYEDYNIGFGFSPIINDYKIVIASQCYTGISAVQVYSLISGSWREVKFSLNCTECLSDESVTVNGIMFWLGSKRVGKDTDDHEVQIVSFDLANEVFTSIAIPELPGWTTLTVYEEKVALVSYMTNSELSVHLWVMEEGVHASGEIWSWTKRYTSNPYPCWLYLETIWRNEIVCIANIENKRTAVLFNPTTKRIKKHVISKCVCYPDIFNYAESLVPVGGMKSLQIFCMASTH 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00960 377 Pfam F-box domain 13 48 IPR001810 GO:0005515
Accr11g00960 377 CDD F-box_AtFBW1-like 11 49 - -
Accr11g00960 377 Gene3D - 12 49 - -
Accr11g00960 377 Pfam F-box associated domain 206 292 IPR013187 -
Accr11g00960 377 SMART fbox_2 13 53 IPR001810 GO:0005515
Accr11g00960 377 PANTHER BNAA05G37150D PROTEIN-RELATED 13 343 - -
Accr11g00960 377 NCBIfam F-box protein interaction domain 105 334 IPR017451 -
Accr11g00960 377 SUPERFAMILY F-box domain 9 79 IPR036047 GO:0005515
Accr11g00960 377 ProSiteProfiles F-box domain profile. 7 53 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00960 Accr-Chr11 19265998 19267131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00960 144 291 Carbohydrate Esterase AT1G25141 27.044 3.04e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00960 - - pcin:129286166 407.142