Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00875 ATGGCAGGATCATCATCCTCTTCTATCACTTACAAATGGCCCTATGATGTGTTCCTCAGTTTTTATGGTGATGATACTCGCTTAGGTTTCATCAGCCATCTCTATGAATCTCTGCGTCGAAGTGGAATTCATGCCTTTATTGATTACAAAATCAGGGAGGGAGAAAACATTACACCTGCACTTTTCAAAGCTATTAAAGAATCAAGAATAGCCATCATAGTTTTCTCAGAAAACTATGCAAACTCAACATTTTGTTTGCAAGAACTTGAAAAGATTCTTGAGTGTTTTAAGGAAGAGGGTCGGTTGATATATCCAGTGTTTTACTATGTGGATCCCTCAGATCTACGCCGTACTAGAGGAAGCTATGCAGATGCGTTGGCTCGACAAGAGAGAAGATTCAAAGATGAGAGGCACAAGGTGGAAAAATGGGGGCAGGCTCTGTCTCAAGCTGCTGACTTCAAAGGCTATCATCTCAAACCCAAGATTGCAAATGAACAAGAGTGTATTACAAGGATCACTTGTGAAGTTGCTGCTAGAATTAACTTAAAGCCTTTACATGTTACAAATTATCCAGTTGGACTGGAGTTTCGAGTGAAGGAAGTCATCTCTTGTTTAGATATATGGTCCACTAAGGAAATTAAAATGATAGGAATTTGGGGAGGTGGTGGAATCGGTAAATCAACTCTTGCAAGAGCTGTATATAATTCCATTGCCGATAATTTTGAAGGTGTATGTTTTCTTTCTGATGTAAGAAAGCAATCTGAAATGCCAAATGGTTTGTCACATCTTCAAGAAAAACTATTGGGTAGATTACTCGAGGAGAAAGATCTCAAATTGGGTGATTATCATGAAGGAATACCAATAATAGAACATAGGCTTAGTCAAAAGAAGATTCTGTTGATTCTTGATGATGTTGACGAACCAAACCAATTAAAAGCACTTGCTGGACATTGTGATTGGTTCGGTCATGGAAGTAGAATCATCATCACCACTAGAAATAAGCAATTATTAAAATGTCAGGGTATTAAAAGCATTTATGATGTCAAGGAATTAAATCACTGGGACTCTCTAAAGCTGCTTACTTGGTATGCCTTTAAAAACGAAAATGTGGATTCCAACTATATGGAGGTTCTCGAACTTGTAACACACTACTGTTGTGGCTTTCCATTAGTTTTAGAAGTTATTGGTTCTAACTTGTACGGTAAAGAACTCCGTCAATGGAGTTCCGCACTGGATCAATTTAAAAGCATACCAAATAGAACAATTTTGAATACCTTGAAATTAAGCTTTGATATGTTAGAAGAAGTAGAGAAACAATTTTTCCTTGACTTGGCTTGTTTTTTCAATGGTAAGAAAGCAAAACATGTCAATGATATGCTCCTATGTCTTCGTGGAATCCAACCAGAATATGCTATTAGAAATCTTGTTGATAAATCCCTTATAAAGAGTGATGAACTAGGTCGTATAACAATGCATGACTTGATAGAAGACTTAGGTAAAGATATTGTTCGACAAGAATCATCATATGAGCCTGGTGAGCGTAGCAGATTGTGGTTCTATCAAGACATTCTTCATGTATTACAACAAGATACAGGAACTAATAAAGTTGAAGCCATAATTCTAGACTTGCCTGAAAGTATAGAAGTACAATGGAGTGGAGAGGAACTTATAAAGATGAAAAATCTCAAAATGCTTGTGATAAGAAATGCTTGCTTTTCTGAAAGTCCAAAATATCTACCAAATAGCTTAAGGTGGTTGGAATGGAAAGGATATTCTTTCAAATCTTTACCATGCCAAGTGCGCCCAACCCGACTTGTCTACCTTGACTTGTCCAACAGTTATTGTGAATTTCTCCAACCATTTGATAAGAAGTTTTTGAATCTAAATCATATGAATTTAAAAAATTGTAAATTTCTACAACAAATACCAGACTTATCTGGAGCTTCTAATCTAACAAAATTGTGGCTTGATGGTTGCACAAATTTAACTGAAATTCATGATTCAGTTGGATGTTTAAATAAGTTGAGAGAATTAAGTGCTATGCGATGCAACAACTTGAAGATTTTTCCTTCTCGCCTTAGGTTGACATCTCTTGAGATCTCAACCTTTTTGGTTGTTCAAGTCTTCAGATATTTCCAGAAATATCAATCGTGA 2154 0.3621 MAGSSSSSITYKWPYDVFLSFYGDDTRLGFISHLYESLRRSGIHAFIDYKIREGENITPALFKAIKESRIAIIVFSENYANSTFCLQELEKILECFKEEGRLIYPVFYYVDPSDLRRTRGSYADALARQERRFKDERHKVEKWGQALSQAADFKGYHLKPKIANEQECITRITCEVAARINLKPLHVTNYPVGLEFRVKEVISCLDIWSTKEIKMIGIWGGGGIGKSTLARAVYNSIADNFEGVCFLSDVRKQSEMPNGLSHLQEKLLGRLLEEKDLKLGDYHEGIPIIEHRLSQKKILLILDDVDEPNQLKALAGHCDWFGHGSRIIITTRNKQLLKCQGIKSIYDVKELNHWDSLKLLTWYAFKNENVDSNYMEVLELVTHYCCGFPLVLEVIGSNLYGKELRQWSSALDQFKSIPNRTILNTLKLSFDMLEEVEKQFFLDLACFFNGKKAKHVNDMLLCLRGIQPEYAIRNLVDKSLIKSDELGRITMHDLIEDLGKDIVRQESSYEPGERSRLWFYQDILHVLQQDTGTNKVEAIILDLPESIEVQWSGEELIKMKNLKMLVIRNACFSESPKYLPNSLRWLEWKGYSFKSLPCQVRPTRLVYLDLSNSYCEFLQPFDKKFLNLNHMNLKNCKFLQQIPDLSGASNLTKLWLDGCTNLTEIHDSVGCLNKLRELSAMRCNNLKIFPSRLRLTSLEISTFLVVQVFRYFQKYQS 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00875 717 FunFam Disease resistance protein (TIR-NBS-LRR class) 11 182 - -
Accr11g00875 717 Gene3D - 12 181 IPR035897 -
Accr11g00875 717 ProSiteProfiles TIR domain profile. 13 180 IPR000157 GO:0007165
Accr11g00875 717 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 694 IPR044974 GO:0006952
Accr11g00875 717 Pfam TIR domain 15 176 IPR000157 GO:0007165
Accr11g00875 717 SUPERFAMILY "Winged helix" DNA-binding domain 421 528 IPR036390 -
Accr11g00875 717 PRINTS Disease resistance protein signature 623 639 - -
Accr11g00875 717 PRINTS Disease resistance protein signature 215 230 - -
Accr11g00875 717 PRINTS Disease resistance protein signature 385 399 - -
Accr11g00875 717 PRINTS Disease resistance protein signature 292 306 - -
Accr11g00875 717 Gene3D - 350 434 IPR042197 -
Accr11g00875 717 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 155 IPR035897 -
Accr11g00875 717 Pfam NB-ARC domain 198 418 IPR002182 GO:0043531
Accr11g00875 717 SMART till_3 14 153 IPR000157 GO:0007165
Accr11g00875 717 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 444 IPR027417 -
Accr11g00875 717 Gene3D - 182 343 IPR027417 -
Accr11g00875 717 SUPERFAMILY L domain-like 538 699 - -
Accr11g00875 717 Gene3D Ribonuclease Inhibitor 539 705 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00875 Accr-Chr11 16411195 16414295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00875 15 700 WRKY Transcription Factor Family AT4G12020 32.444 7.19e-76 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00875 - - pcin:129289024 935.636