Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00840 ATGTGTAGTTGTAAAGAAGTTGAGTCGATTCCCACGATTTCTTCTCCTTCTAATATTATTGTTGCTCCTCATGCAACTCATGCAACCAAGTATGACATCTTTCTTAGTTTTAGAGGGGAAGACACTCGCAACACTTTCTCAAGTTATCTCTATGAAGAACTTTGCCGTGCAAACATTCATACTTTTATGGATCACAAGCTCCACAAAGGAGATAATATCTTACCAATTCTTCTCAAAACAATAAAAGAATCAGAGATATCTTTAATTATTTTCTCTAAAGATTATGCTTCTTCTACATGGTGTTTGGATGAGCTCGTTCATATTATGAAATGTAAGGATCAATACGGAAGAACTGTCATCCCTATTTTCTACAATGTAAATCCATCCAATGTTCGCAAGCAAAATGGAAGTTTTGGAGATGGATTTGCTAAGCTTAAGCAAAGATTTAAGCACAGCCAAGAAAGAGTGCAGGAGTGGAAAAATGCTTTGAGGCGTTCAACAAATTTATCTGGATGGAATTCAAAGAAAATTAGGCCTGAACCCAAACTAATCAAAATGATTGTCGAAGACATTTTGAGAAAATTGGATAACAATTCATCCTTTCATTTGGAAGGATTAATTGGGATTGATTATCATATTAAAAAAATTGAAGGGCTATTAAGTGAAGCTCGCATTGTGGGAATATGGGGTATGGGTGGTATAGGCAAGACCACTCTTGCCAGAGCTGTATTTGACAAGTTGAAGGCGCAATTTGAAGCTTTCTACTTTGCCAAAGATGTAAGACAACAATTAGAAAGGAATGGATTGGATGAATTACAGGAAAATTGCCTTAAAGAATTATTAAAAGATGAGAATATTAACAAATACAATTTAAGATCCACTTTTGTGAAGAAAAGGCTTTGCCATAAAAAAATTCTTCTGGTGCTTGATGATGTGGACAATGTTATAGCAATTGAAGATCTAATCAAAGCATGTAGTTGGTTTGGGAAAGGAAGCAGAATTATTATCATATCAAGAGACATGCAAATGCTTAAAAATACTTCTGCATCTATAACATATCATGTTCCGCCATTGGATCCCCATCAAGCCTTTGATCTCTTTAGTTTGAAAGCTTTCAAGCAAAATGAGCCATCAAAAAGATATTTGGAGTTATCAAAGTGGGTAGTGCACTATTGTGAAGGAAATCCATTAGCGTTAATAGTAATGGGTTGCTTTCTTCAAGGTAGAGGAAAAGAAGAGTGGGAAAGTGCTGTGAAAAAACTAAATCAAACTCTTCACAAGAATATTTTTAATGTGTTGAAATTGAGTTTTGATGGGCTTGATGACACACAGAAGAATGTATTTCTCGATCTAGCATTTTTCTTGAACGAAGCATGGCATATTAATTTGGAAGATTGTACAAGATGCTTATATGATACTTCTGCGCTTATTGAGATATGTGTACTTGAAGAGAGAATTGAGATGCATGCTCTTTTAATAGAAATGGGGCTTGGAATTTCTGGGCAACAATTAATATTTAACCCTGAAAAACCCATTCGACTATGGAGGCATCAGGATATTTATCATTTATTCAACAATGACAAGGTAATACTACTTCTCTTCCTTAATAAAAGACATAGTTCATAG 1626 0.3469 MCSCKEVESIPTISSPSNIIVAPHATHATKYDIFLSFRGEDTRNTFSSYLYEELCRANIHTFMDHKLHKGDNILPILLKTIKESEISLIIFSKDYASSTWCLDELVHIMKCKDQYGRTVIPIFYNVNPSNVRKQNGSFGDGFAKLKQRFKHSQERVQEWKNALRRSTNLSGWNSKKIRPEPKLIKMIVEDILRKLDNNSSFHLEGLIGIDYHIKKIEGLLSEARIVGIWGMGGIGKTTLARAVFDKLKAQFEAFYFAKDVRQQLERNGLDELQENCLKELLKDENINKYNLRSTFVKKRLCHKKILLVLDDVDNVIAIEDLIKACSWFGKGSRIIIISRDMQMLKNTSASITYHVPPLDPHQAFDLFSLKAFKQNEPSKRYLELSKWVVHYCEGNPLALIVMGCFLQGRGKEEWESAVKKLNQTLHKNIFNVLKLSFDGLDDTQKNVFLDLAFFLNEAWHINLEDCTRCLYDTSALIEICVLEERIEMHALLIEMGLGISGQQLIFNPEKPIRLWRHQDIYHLFNNDKVILLLFLNKRHSS 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00840 541 SUPERFAMILY Toll/Interleukin receptor TIR domain 26 172 IPR035897 -
Accr11g00840 541 PRINTS Disease resistance protein signature 225 240 - -
Accr11g00840 541 PRINTS Disease resistance protein signature 299 313 - -
Accr11g00840 541 PRINTS Disease resistance protein signature 392 406 - -
Accr11g00840 541 Pfam TIR domain 30 198 IPR000157 GO:0007165
Accr11g00840 541 Gene3D - 199 353 IPR027417 -
Accr11g00840 541 Gene3D - 25 198 IPR035897 -
Accr11g00840 541 SUPERFAMILY "Winged helix" DNA-binding domain 428 523 IPR036390 -
Accr11g00840 541 SMART till_3 30 169 IPR000157 GO:0007165
Accr11g00840 541 FunFam Disease resistance protein (TIR-NBS-LRR class) 27 197 - -
Accr11g00840 541 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 451 IPR027417 -
Accr11g00840 541 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 31 523 IPR044974 GO:0006952
Accr11g00840 541 Pfam NB-ARC domain 210 429 IPR002182 GO:0043531
Accr11g00840 541 Coils Coil 142 162 - -
Accr11g00840 541 Gene3D - 358 441 IPR042197 -
Accr11g00840 541 ProSiteProfiles TIR domain profile. 29 195 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00840 Accr-Chr11 15103014 15104724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00840 23 527 WRKY Transcription Factor Family AT4G12020 27.725 4.29e-48 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00840 - - pcin:129286024 714.531