LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr11g00819	ATGCTCAGAGAAGCTTCATTAATCCTATTGGGAGTATCAATTCACAAAGCTATCAGGTTCATCTCTCATTCGCTAAATAGTAACCAAGCTGTTGCTGTTAATGATAGTTCTAACGATGATGTGAGTCAAACGGGTTCTCCTAGTGCTACAAAGTATGATGTGTTCCTTAGCTTTAGAGGGGAAGACACTCGCCAGACTTTTGCAAGTCATCTTTATAAAGAACTTCTCAATGCAGGCATCCACACTTTTATGGATCATGAACTCCGCAAAGGAGATCAAATCAAACCGGTTCTTTTGAGAACAATAGAGGAATCAGAGATATCAGTGATTATTTTCTCAAGGAATTATGCTTCTTCAACATGGTGTATGGATGAACTTGTTCACATATTGGAATGCAAGGAAAAATTTGGAAGGGTTGTGATACCTATTTTCTACAATGTAGATCCTTCAAACATACGCAAACAAAATGGCAGTTTTGGAAATGGATTTAATGTATTGAAGCAAAGATTTAAAGACAATCAAGAAAAATTGCAAAAATGGACAAATGCTTTAGTCCAATCTACAAGTCTCTCAGGATGGGATTCCAATAGTCTCAAGCCTGAATTCAAACTTGTTGAGGAGATTGCCAAAGACATTCTAAGAAAGTTGAAGCATAAGTCATCATCTCATCTTGAAGGATTGGTTGGCTTTTCTTGTCATATTGAAAACATTGAAAAACTTTTGGCTGATGCTCGAATTGTGGGAATATGGGGTATGGGCGGTGCTGGTAAGACAACTCTTGCTAAAGCTGTATTTCAACAGTTAAGAGCTCAATTTGATGCTCTCTCCTTTATTGAAAAGGTCAATGAGAAATTAGCAAGAATTGGCTTTGATGAATTAGTGAAAAATTGCCTCAAAGACATATTAAAAGATGAGGACATCAGCATCTATGACATAAAATCCAATTATGTGAAAAGTAGGCTTGAGCGCAAAAAAATTCTTCTTGCACTTGATGATGTGGACAATTCAGTAATAGTTGAAGACTTAATTAAAGTGTGTGATTGGTTTGGGAAAGGAAGTAGGATTATTATAACTTCAAGAAATAAGCAAGCTCTTAAGAATGCTTCTTCATTTTCAACTTATCATGTTCCAGGATTGAATTTCCGTGATGCTATTCATCTCTTTCATTTGAAATCGTTCAAGCAACAAGAGCCATCTGAAGGTTACATTGAGTTATCAAAATCAGTAGTGGAATATTGTCAAGGAAATCCATTAGCCTTGGTAGTGTTGGGTTGCTTTCTCTATAGAAGAGAAAAAGAAGAGTGGAAACGTGCTTTGGAGAAACTAAATGAAGCTCCACCCAAGGACATAGTTGATGTTTTGAAGTTGAGTTATGATGGACTTGATGAAGAACAACAAAATATGTTTCTTGACTTGGCATTCTTACTCAAGGAAGGATTTTATATTTCTGTGAACTTGATAAGACAAATATATGGTGAGGAAGGAGTTTGTATTTCTGCGAACGTGATAAGACAAATATATGGCTCTTTTGTAGATATTGAAATTAGTGTTCTGAGAGAGAAATCCCTCATTTCATTTGACAATTATACTGATTGTATTGGGATGCACAATCTTGTAATGGAAATGGGTCTTGAAATTGCTCGACGACAGTTATTCTCTGGTCCCAAAACTCATGTTCGACTATGGAGGCACGAGGACATTTATGAATTTTTCAGCCATGGCAAGGGAATAGGGGGAATTCGATTTTTGTCATTGGACTTGAGCAAGACAAGAAGGAGGACTGCATTGAGGGCTAGTAATTTTCGGAAGATGCATAAATTAATATTCCTTAAATTTCACAAGTCTGATAGGAGAAAGCCTTCAGAGTTGACTATTTGCGACAAATTGGATTATCTTCCTGAAGAATTGAGGTTTTTAACTTGGGAAGAATATCCATTTCCATATGTGCCATTACACTTTTGCTCTGAGAATCTTAGTAGCCTTGACATGCCTAAGAGTAATGTCCGGCAGCTTTGGAATGAAAATCAACATTTTCCAAATCTAAAGCGCATTAGTTTGTGGGATTCTGAACATCTAACTGCACTCCCAGATCTCTCTCATGCTCCTAAGATTCGAGCTATAAATGTTATGGGTTGTTCTAAATTAAAAAAAAATCAATTCTTCAACAGTCCTGAGCAACATTTCATTGATATTGACAGGACGTGGTAG	2208	0.365	MLREASLILLGVSIHKAIRFISHSLNSNQAVAVNDSSNDDVSQTGSPSATKYDVFLSFRGEDTRQTFASHLYKELLNAGIHTFMDHELRKGDQIKPVLLRTIEESEISVIIFSRNYASSTWCMDELVHILECKEKFGRVVIPIFYNVDPSNIRKQNGSFGNGFNVLKQRFKDNQEKLQKWTNALVQSTSLSGWDSNSLKPEFKLVEEIAKDILRKLKHKSSSHLEGLVGFSCHIENIEKLLADARIVGIWGMGGAGKTTLAKAVFQQLRAQFDALSFIEKVNEKLARIGFDELVKNCLKDILKDEDISIYDIKSNYVKSRLERKKILLALDDVDNSVIVEDLIKVCDWFGKGSRIIITSRNKQALKNASSFSTYHVPGLNFRDAIHLFHLKSFKQQEPSEGYIELSKSVVEYCQGNPLALVVLGCFLYRREKEEWKRALEKLNEAPPKDIVDVLKLSYDGLDEEQQNMFLDLAFLLKEGFYISVNLIRQIYGEEGVCISANVIRQIYGSFVDIEISVLREKSLISFDNYTDCIGMHNLVMEMGLEIARRQLFSGPKTHVRLWRHEDIYEFFSHGKGIGGIRFLSLDLSKTRRRTALRASNFRKMHKLIFLKFHKSDRRKPSELTICDKLDYLPEELRFLTWEEYPFPYVPLHFCSENLSSLDMPKSNVRQLWNENQHFPNLKRISLWDSEHLTALPDLSHAPKIRAINVMGCSKLKKNQFFNSPEQHFIDIDRTW	735

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr11g00819	735	Gene3D	Ribonuclease Inhibitor	581	727	IPR032675	-
	Accr11g00819	735	FunFam	Disease resistance protein (TIR-NBS-LRR class)	48	218	-	-
	Accr11g00819	735	PRINTS	Disease resistance protein signature	246	261	-	-
	Accr11g00819	735	PRINTS	Disease resistance protein signature	320	334	-	-
	Accr11g00819	735	PRINTS	Disease resistance protein signature	676	692	-	-
	Accr11g00819	735	PRINTS	Disease resistance protein signature	413	427	-	-
	Accr11g00819	735	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	52	719	IPR044974	GO:0006952
	Accr11g00819	735	ProSiteProfiles	TIR domain profile.	50	216	IPR000157	GO:0007165
	Accr11g00819	735	Gene3D	-	215	373	IPR027417	-
	Accr11g00819	735	SMART	till_3	51	190	IPR000157	GO:0007165
	Accr11g00819	735	SUPERFAMILY	L domain-like	535	716	-	-
	Accr11g00819	735	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	220	472	IPR027417	-
	Accr11g00819	735	SUPERFAMILY	Toll/Interleukin receptor TIR domain	46	193	IPR035897	-
	Accr11g00819	735	Gene3D	-	379	462	IPR042197	-
	Accr11g00819	735	Coils	Coil	425	445	-	-
	Accr11g00819	735	SUPERFAMILY	"Winged helix" DNA-binding domain	449	570	IPR036390	-
	Accr11g00819	735	Pfam	TIR domain	51	226	IPR000157	GO:0007165
	Accr11g00819	735	Gene3D	-	48	214	IPR035897	-
	Accr11g00819	735	Pfam	NB-ARC domain	238	448	IPR002182	GO:0043531

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr11g00819	Accr-Chr11	13714332	13717628	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr11g00819	48	713	WRKY Transcription Factor Family	AT4G12020	28.047	1.28e-68	244

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr11g00819	-		-	pcin:129286024	852.432