LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr11g00818	ATGGACGCAACTCTTTCTTTACTGCTCATAGAAGCTGTATTGATTTTGCTGGCTATAGCAATTTCTAAAGCTATCGGATTAATCTCTCCACTTGATGATAGTTGTAAAGATGTTGATTCTATTCCCACGGTTTCTTCTCCTTCTCGTATCATTTCTTCTCCTACTGCAACCAAATATGATGTCTTTCTTAGCTTTAGAGGGGAAGACACTCGTGACGCTTTCTCAAGTTATCTCTATGAAGCACTTTGCAACGCAAACATTCATACTTTTATGGATCACAAGCTCCACAAAGGACAACATATTGCACCAGTTCTTCTGAAAACAATAGAGGAATCAGAGATATCTTTAATTATTTTCTCCAAAGACTATGCTTCTTCAACATGGTGTATGGATGAGCTCGTTCATATTATGAAATGTAGGGATAAATATGGAAGAATTGTCATCCCTGTTTTCTACAACGTAGATCCCTCAAATATTCGCAAACAGGATGGGAGTTTTGGAGATGGATTTGCTAAGCTTAAGTTTAGATTTAAGCACAACCTAGAAAAAGTGCAGGAGTGGAAAAATGCATTGATCCAATCAACAAAATTATCTGGGTGGGATTCAAAGAATATCAGGCCTGAATCTAAACTTGTGAAAAAGATTGTCGAAGATATTTTGAGCAAACTGAATACCGAGTCATCATTTCATGTTGAAGGATTAGTTGGCATTGATCATCAAATTCAAAAAATTGAAGAGCTACTACATGAAGCTCGCATTGTAGGAATATGGGGCATGGGTGGTATAGGTAAGACCACTCTTGCCAGAGCTGTATTTCTCAAGTTGAACGAAAAATTTGAAGCTTTTTCCTTTGTTGGAAATGTGAGAGAACAACTTAAAAGAATAGGATTAGATGAATTACAAAAAAAGTGCCTTGAAGAATTATTAAAAGATGAGGATGTTAAGGCTTACAATTTAAAATCCACTTCTGTGAAAAATAGACTTCATCGTAAAAAAATTCTTTTGATCCTTGATGATGTGGATAGTTCTATTGCAATTGAAGATTTAATCAAAGTAAGTGATTGGTTTGGGGAAGGAAGTAGAATTATTATCACATCAAGAGACATGCAAGTGCTTAAGAATACTTCTGCATGTAGAACATATCATGTTCCGCAGTTGGATTCCCATCAAGCCCTTCATCTCTTTAGTTTGAAAGCTTTTAAGCAAAATGAACCGTCAAAAAGTTATCTAGAGTTGTCAAAGTGGGTAGTGGATTATTGTGAAGGAAATCCATTAGCTCTAATAGTGTTGGGTTGCTTTCTTCATGGTAGAGGAAAAGAAGAGTGGGAAAGTGCTATGAAAAAACTAAATCAAACTCTTCACAAGGACATTTTTAATGTGTTGAAATTGAGTTTTGATGGACTTGATTACACACAGAAGAATGTATTTCTCGATCTAGCTTTTTTCTTGAACGAAGCATGGAGGATTTCTGTGGAAGATTGTACAAGACGCATATATGATTCTTTTGCTCATATTGAGATAAGTGTGCTTAAAGAGAGATCTCTCATTTCAGTGCATGAAAATGGTGATATTGAGATGCATGCTCTTCTAATGGACATGGGGCTTGAAATTTCTAGGCAACAATTAATATCTAACCCTGAAAAACCTATTCGACTATGGAGGCATGAGGATATTTATAATTTCTTCCACAATGACAAGGGCGCCGAGGAAGTCCAATGCTTATCATTAGACATGAGCAAAATAAAAAGGATTACACTGACTACTAGTAATTTTCAAAAGATGTATAATTTAAAATTCCTTAAATTGTACAAGTCAGAAAGGAAGAAGCCTTCAAAAGTTAATATTTATGGAGATCTGGATTCTCTTCCTGAGGAATTGAAGTTCCTCTTTTGGATTGATTGTCCTCTTCAATCTATGCCATTAAGCTTTTGTGCGGAGAATCTTGTTCATCTTATAATGCCAAACAGTCGTCTCCAACAACTTTGGGATGGAAATCAACAATTTCCAAATTTAAAGAAGATTGATGTCAGTAACTCAAAATATCTCATGGCACTTCCTGATCTATCGGATGCCCCAAACCTTGAAAAATTAGAGGTAGATGGTTGTGTAAATTTGGCTCAAATCCATTCTTCAAATGTCCTCGGCAAGCTTACGCACTTGACTCTTGAATCCTGCAAAAGATCAAGGCACATAGACTTTGGCGGTGGCTCTGTTAATGGGACAAACAAATCTGGGTTAGTGACTATCAACAATTTTTTTGATTTTAACGAATTCTCATTCACTAAAGTGACTATGAAACTCTTGGTATCTGATGATGGCAATGTTATAACTGGTTTTAAATTTAAACTTTTATTCATGCCATTTGAAGAGATCTTAGAGTGCAGGGACTATATTGAGAGCATGAAGTTAATATTATGGACACAAAGTTTGTCTTTTTTACTTCCTTTTGTTTGGACTGTTCATTGGTCAGAGAGTCCAATTGAGTTTGGGAATTTCAAGCAATATTTTGACTGTGATCATTACTATGACTCCCACGTATTTGGTGAGAGGATCCAAATAAAAATGAAAGAAGTGGGAGTGGAAAAGAAAGCACAAAGCAGCGTTGTCTGGCCACTAATAGTAAGAGGTGATGTGGTTGATGAATATTATGAAGAAGAGGAATGTTGCAGCAACAATGATAAGAATTATACGCTCACAAGAGTGCCAAACTACATCACTCGCTGGTCATTGTTGAAACAAGTGTCACTAAAGAAGAGTGATATTATTGGAAGTGGAGGTTTGAGCATTCCTCAAGTTTGGATTTTGAGGTCACTTGCACGATCTGAGTGTTGTGAAGGGCTCCAAACTTTGAAGGATACAAGATTGTGTTTGGACGTTCCAACAAGAGATTGGTGTGGTCAGGACTTTTGTGTATCGTATGTTCATTCCTCTGAATGTGTTAGAGACATGGCCATGGGTGCATTGTCTCTAGCCCTCTTTGTTTTTGGGACTGATATTGTCTTTTAA	3006	0.3646	MDATLSLLLIEAVLILLAIAISKAIGLISPLDDSCKDVDSIPTVSSPSRIISSPTATKYDVFLSFRGEDTRDAFSSYLYEALCNANIHTFMDHKLHKGQHIAPVLLKTIEESEISLIIFSKDYASSTWCMDELVHIMKCRDKYGRIVIPVFYNVDPSNIRKQDGSFGDGFAKLKFRFKHNLEKVQEWKNALIQSTKLSGWDSKNIRPESKLVKKIVEDILSKLNTESSFHVEGLVGIDHQIQKIEELLHEARIVGIWGMGGIGKTTLARAVFLKLNEKFEAFSFVGNVREQLKRIGLDELQKKCLEELLKDEDVKAYNLKSTSVKNRLHRKKILLILDDVDSSIAIEDLIKVSDWFGEGSRIIITSRDMQVLKNTSACRTYHVPQLDSHQALHLFSLKAFKQNEPSKSYLELSKWVVDYCEGNPLALIVLGCFLHGRGKEEWESAMKKLNQTLHKDIFNVLKLSFDGLDYTQKNVFLDLAFFLNEAWRISVEDCTRRIYDSFAHIEISVLKERSLISVHENGDIEMHALLMDMGLEISRQQLISNPEKPIRLWRHEDIYNFFHNDKGAEEVQCLSLDMSKIKRITLTTSNFQKMYNLKFLKLYKSERKKPSKVNIYGDLDSLPEELKFLFWIDCPLQSMPLSFCAENLVHLIMPNSRLQQLWDGNQQFPNLKKIDVSNSKYLMALPDLSDAPNLEKLEVDGCVNLAQIHSSNVLGKLTHLTLESCKRSRHIDFGGGSVNGTNKSGLVTINNFFDFNEFSFTKVTMKLLVSDDGNVITGFKFKLLFMPFEEILECRDYIESMKLILWTQSLSFLLPFVWTVHWSESPIEFGNFKQYFDCDHYYDSHVFGERIQIKMKEVGVEKKAQSSVVWPLIVRGDVVDEYYEEEECCSNNDKNYTLTRVPNYITRWSLLKQVSLKKSDIIGSGGLSIPQVWILRSLARSECCEGLQTLKDTRLCLDVPTRDWCGQDFCVSYVHSSECVRDMAMGALSLALFVFGTDIVF	1001

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr11g00818	1001	Pfam	TIR domain	58	227	IPR000157	GO:0007165
	Accr11g00818	1001	SUPERFAMILY	L domain-like	571	732	-	-
	Accr11g00818	1001	FunFam	Disease resistance protein (TIR-NBS-LRR class)	55	225	-	-
	Accr11g00818	1001	Gene3D	-	226	381	IPR027417	-
	Accr11g00818	1001	SUPERFAMILY	Toll/Interleukin receptor TIR domain	55	200	IPR035897	-
	Accr11g00818	1001	Pfam	NB-ARC domain	242	455	IPR002182	GO:0043531
	Accr11g00818	1001	Gene3D	-	54	225	IPR035897	-
	Accr11g00818	1001	ProSiteProfiles	TIR domain profile.	57	223	IPR000157	GO:0007165
	Accr11g00818	1001	SMART	till_3	58	197	IPR000157	GO:0007165
	Accr11g00818	1001	PRINTS	Disease resistance protein signature	666	682	-	-
	Accr11g00818	1001	PRINTS	Disease resistance protein signature	253	268	-	-
	Accr11g00818	1001	PRINTS	Disease resistance protein signature	327	341	-	-
	Accr11g00818	1001	PRINTS	Disease resistance protein signature	420	434	-	-
	Accr11g00818	1001	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	226	479	IPR027417	-
	Accr11g00818	1001	Pfam	Leucine Rich Repeat	647	666	IPR011713	-
	Accr11g00818	1001	Gene3D	-	385	469	IPR042197	-
	Accr11g00818	1001	Gene3D	Ribonuclease Inhibitor	560	741	IPR032675	-
	Accr11g00818	1001	SUPERFAMILY	"Winged helix" DNA-binding domain	456	560	IPR036390	-
	Accr11g00818	1001	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	59	749	IPR044974	GO:0006952

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr11g00818	Accr-Chr11	13673595	13677098	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr11g00818	55	731	WRKY Transcription Factor Family	AT4G12020	28.879	3.71e-72	260

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr11g00818	-		-	pcin:129286024	1146.34