LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr11g00817	ATGCTCAAAGAAGCTTCATTGATCCTATTGGGAGTATCAATTCACAAAGCTATCAGATTCATCTCTCATTCGCTAAATGGTAACCAAGCTGTTGCTGATGATGATAGTTCTAATGATGATGTGGTTTTAAGTCGTGCTACAAAGTATGATGTGTTCCTTAGCTTTAGAGGGGAAGACACTCGCCAGACTTTTGCAAGTCATCTTTATAAAGAACTTCGCAATGTAGGCATTCACACTTTTATGGATCATGAACTCCGCAAAGGAGAAGAAATCTCACCGGTTCTTTTGAAAACAATTGAGGAATCAGAAATATCAGTGATTATTTTCTCACAGAATTATGCTTCTTCAACATGGTGTATGGACGAACTTGTTTGCATATTGGATTGTAAGAAAAAATTTGGAAGGGTTGTGATACCTATTTTCTATAAGGTGGATCCTTCAAACATACGGAAACAAAATGAGAGTTTTGGAAATGGATTTGATGAATTGAAGCGAAGATTTAAAGACAATAAAAAAAAATTGCAAAAATGGAGACATGCTTTAATCCAGTCTACAAGTCTCTCCGGATGGGATTCCAATAGTCTCAGACCTGAATCCAAATTTGTTGAGGAGATTGCCAAAGACATTTTGAGCAAGTTGAATTATAAGTCATCATCTCACCTTGAAAGACTTGTTGGCATTACACATCATATTGAAAATATTGAAAAAATTTTAAATGAAGCTTCTATTATGGGGATATGGGGTATGGGTGGTTCCGGTAAGACCACACTTGCTAAAGCTCTATTTCAAGAGTTGAAAGCTCAATTTGATGCTTTCTCCTTTGTTGAAAATGTCAAAGAGCAATTATCAAGCATTAGTTTGGATGAGTTACAGAAAAATTGCCTCAAAGAATTATTAAAAGATGAGGACATCAACATCTATGATATAAAATGCAATTCTGTGAAAAGTAGGCTTCAACACAAAAAAGTTCTCCTTGTACTTGATGATGTGGACAATTCAATAATAGCTGAAGATTTAACAAAAGTGTTTGATTGGTTTGGGGCAGGAAGTAGGATTATTTTAACATCAAGAAACAAGCAAGTGCTTAAAAATGCTTCTAAATATTCAGCTTATCATGTTGTAGAATTGGATTTCCATCATGCCTTTTATCTCTTTAGTTTGAAAGCGTTCAAGCAACATGAGCCATCTGAAGGTTATATGGAGTTATCAAAATCAGTAGTGAAATATTGTCAAGGAAATCCATTAGCCTTGGTAGTGTTGGGTTGCTTTCTCTATGGTAGAGTAAAAGAAGAGTGGGAAAGTGCTTTGGAGAAACTAAATGAAGCTCCACCCGAGGACATTGTTAATGTTTTGAAGTTGAGTTTTGATGGACTTGATGGCAAACAGCAGAATTTGTTTCTTGACTTGGCATTCTTAGTCAAGGAAGCAGTTCGTATTTCTGTGAACCTGATAAGACAAATATATGGCTCTTCTGTGGATATTGAAATTAGTGTTCTGAGAGAGAAATCCCTCATTTCATTTAACAATCATACTGATCCTATTGAGATGCATAATCTTGTCATGAAAATGGGCCTTGAAATTGCTAGACGACAATTATCTAGTCCTAAAACTCTTATTCGACTATGGAGGCATGAGGACATTTTTGAACTTTTCATCTGTGACAAGGGAATAGAAGCAATTCGATGCTTGTCATGGGACTTGAGCAAGATAAGAAGGAGGACTAGATGGAGCGCTAGTAATTTTGAGAGGATGCATAATTTAATATTCTTTAAAGTTCACAAATCTGATAAAAGAAAGCTTTCAGAGTTGGCTATTTGTGACAATTTGGATTATCTTCCTGAAGAACTGAGGTTTTTTACTTGGGAAGAATATCCATTTCCACATGTGCCATTACATTGTTGCTCAAAGAATCTTATTACGCTTACGTTGCCTAATAGTAATATCCAACAGCTTTGGAATGAAAATCAACATTTTCCAAATCTAAAGGAAATCAATATGTGGGGTTCAAAACATCTAATTGCACTCCCAGATCTCTCTCATGCCCCTAAGATTGAACGTGTGTTTCTTGGGGGTTGTGTAAATTTGGCTAAAGTCCATTCTTCAATAGTCTTGGGCAATCTTGCTGATTTATTGCTAGGAAATGGTGGGCCAAGGCAAATAAACATTGGGGGAAGTATGAAAGGGACGAGGTCAGGGGTAGGTTTGGTGTTCAATTATTTGGATCTTGACAAGTTGTCATTGAATAATGTGAGAATGAAGGTGTTAGTATGTGGCGATATCATATGCGGTGTTGGATTTAGACATGTGGAAACGCCATTGGCAGAGATAGCAAAATTGAGATATTTACTTCCATTTGTGAGGAAAGTTGGATTGTTAGAGGGTCCAATTGAGTATGGGCATGATTTCAGGCAACATTATGACTATGACTATGATTATAATTATTTGAGTCATCATAGGGTTCGAGTTAGAATGAAGTGGAGGAGGAGGGGTGATAGAGGAGGAGAAAGGCATGTGGTGGGGCCATTGACCGGAGAAATTATTGATGATCATCATCATCAAACATCAATGGAAGCTAGAGAAGGAGGAGGAGGAGGAGAAGAGGAGGAGGAGGAGGAGGAATTAATGAGCATATATCATTATGGTTTCTTGCAGTTTGATGAGGAGGAGGAGGAGGAATTAATGAGCATATATCATTATGGTTACTACAAGAGTGCGCGCAGCAGGAGTAATGCTACAATATTCATAAGAGTTCCTAGCAGCTTTACTCGATGGTCATTGTTGATGAAACTGACATTAAGAAAGAGTGATTCAATCCTCAAATCACTTTCACTTTCATTCTCTCATGCTTCTTGA	2853	0.3701	MLKEASLILLGVSIHKAIRFISHSLNGNQAVADDDSSNDDVVLSRATKYDVFLSFRGEDTRQTFASHLYKELRNVGIHTFMDHELRKGEEISPVLLKTIEESEISVIIFSQNYASSTWCMDELVCILDCKKKFGRVVIPIFYKVDPSNIRKQNESFGNGFDELKRRFKDNKKKLQKWRHALIQSTSLSGWDSNSLRPESKFVEEIAKDILSKLNYKSSSHLERLVGITHHIENIEKILNEASIMGIWGMGGSGKTTLAKALFQELKAQFDAFSFVENVKEQLSSISLDELQKNCLKELLKDEDINIYDIKCNSVKSRLQHKKVLLVLDDVDNSIIAEDLTKVFDWFGAGSRIILTSRNKQVLKNASKYSAYHVVELDFHHAFYLFSLKAFKQHEPSEGYMELSKSVVKYCQGNPLALVVLGCFLYGRVKEEWESALEKLNEAPPEDIVNVLKLSFDGLDGKQQNLFLDLAFLVKEAVRISVNLIRQIYGSSVDIEISVLREKSLISFNNHTDPIEMHNLVMKMGLEIARRQLSSPKTLIRLWRHEDIFELFICDKGIEAIRCLSWDLSKIRRRTRWSASNFERMHNLIFFKVHKSDKRKLSELAICDNLDYLPEELRFFTWEEYPFPHVPLHCCSKNLITLTLPNSNIQQLWNENQHFPNLKEINMWGSKHLIALPDLSHAPKIERVFLGGCVNLAKVHSSIVLGNLADLLLGNGGPRQINIGGSMKGTRSGVGLVFNYLDLDKLSLNNVRMKVLVCGDIICGVGFRHVETPLAEIAKLRYLLPFVRKVGLLEGPIEYGHDFRQHYDYDYDYNYLSHHRVRVRMKWRRRGDRGGERHVVGPLTGEIIDDHHHQTSMEAREGGGGGEEEEEEEELMSIYHYGFLQFDEEEEEELMSIYHYGYYKSARSRSNATIFIRVPSSFTRWSLLMKLTLRKSDSILKSLSLSFSHAS	950

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr11g00817	950	Gene3D	-	211	372	IPR027417	-
	Accr11g00817	950	Pfam	NB-ARC domain	230	444	IPR002182	GO:0043531
	Accr11g00817	950	Gene3D	-	46	210	IPR035897	-
	Accr11g00817	950	SUPERFAMILY	L domain-like	574	715	-	-
	Accr11g00817	950	FunFam	Disease resistance protein (TIR-NBS-LRR class)	45	215	-	-
	Accr11g00817	950	SUPERFAMILY	"Winged helix" DNA-binding domain	446	550	IPR036390	-
	Accr11g00817	950	PRINTS	Disease resistance protein signature	410	424	-	-
	Accr11g00817	950	PRINTS	Disease resistance protein signature	317	331	-	-
	Accr11g00817	950	PRINTS	Disease resistance protein signature	656	672	-	-
	Accr11g00817	950	PRINTS	Disease resistance protein signature	243	258	-	-
	Accr11g00817	950	Gene3D	Ribonuclease Inhibitor	562	749	IPR032675	-
	Accr11g00817	950	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	49	729	IPR044974	GO:0006952
	Accr11g00817	950	SMART	till_3	48	187	IPR000157	GO:0007165
	Accr11g00817	950	SUPERFAMILY	Toll/Interleukin receptor TIR domain	44	190	IPR035897	-
	Accr11g00817	950	Pfam	TIR domain	48	224	IPR000157	GO:0007165
	Accr11g00817	950	MobiDBLite	consensus disorder prediction	851	870	-	-
	Accr11g00817	950	Gene3D	-	376	459	IPR042197	-
	Accr11g00817	950	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	217	469	IPR027417	-
	Accr11g00817	950	ProSiteProfiles	TIR domain profile.	47	213	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr11g00817	Accr-Chr11	13597785	13601756	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr11g00817	43	692	WRKY Transcription Factor Family	AT4G12020	27.928	1.31e-67	245

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr11g00817	-		-	pcin:129286024	936.406