Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00810 ATGGCGAAGAAAGCTACGCGGTCGCAAAAGAGGTCTCTCTCATCACCCACTGTTTCTGCTTCTATTGAACACTCTACAAGAACTTCTTCTGACGGGATAGTGTTGAGGGTAAAATTAAATGAGGGGATGAAGAGATCTTCCCAGCTGAATAAGTCAGGGAAGAAACCCAAAGCAAAGCAAAAGAAGATTAACAAAAAACTTGATGCTAAGAAACCAAAGAAACCACCAACTGCTTTCTTCTACTTCTTGGAGGATTTTCGGAAAGAATTTCAAGAGCAGAATCCAGATGTCAAGTCAATGCGTGATATCGGCAAGGCTTGTGGAGAGAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTACGATATAGCCACAGAGAAACGAGCAGAATTTGATAGAGCAATGATCGAATATAACAAGAAAATGGAAAGTGGAGAGTACGAAGAAACTGATGAAGAATCCGAGTTTGATAATGTGTAA 486 0.4012 MAKKATRSQKRSLSSPTVSASIEHSTRTSSDGIVLRVKLNEGMKRSSQLNKSGKKPKAKQKKINKKLDAKKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATEKRAEFDRAMIEYNKKMESGEYEETDEESEFDNV 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00810 161 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 72 141 IPR009071 -
Accr11g00810 161 MobiDBLite consensus disorder prediction 1 74 - -
Accr11g00810 161 MobiDBLite consensus disorder prediction 7 33 - -
Accr11g00810 161 SMART hmgende2 71 142 IPR009071 -
Accr11g00810 161 Gene3D High mobility group box domain 66 156 IPR036910 -
Accr11g00810 161 Pfam HMG (high mobility group) box 72 141 IPR009071 -
Accr11g00810 161 CDD HMG-box_AtHMGB1-like 77 133 - -
Accr11g00810 161 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 46 157 IPR031061 -
Accr11g00810 161 SUPERFAMILY HMG-box 65 146 IPR036910 -
Accr11g00810 161 MobiDBLite consensus disorder prediction 50 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00810 Accr-Chr11 13462582 13481711 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Accr11g00810 HMG_box 5.4e-18 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00810 - - qsa:O6P43_012939 171.4