Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00809 ATGGCGAAGAAAGCTACGCGGTCGCAAAAGAGGTCTCTCTCATCACCCACTGTTTCTGCTTCTATTGAACACTCTACAAGAACTTCTTCTGACGGCAGGATAGTGTTGAGGGTAAAATTAAATGAGGGGATGAAGAGATCTTCCCAGCTGAATAAGTCAGGGAAGAAACCCAAAGCAAAGCAAAAGAAGATTAACAAAAAACTTGATGCTAAGAAACCAAAGAAACCACCAACTGCTTTCTTCTACTTCTTGGAGGATTTTCGGAAAGAATTTCAAGAGCAGAATCCAGATGTCAAGTCAATGCGTGATATCGGCAAGGCTTGTGGAGAGAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTACGATATAGCCACAGAGAAACGAGCAGAATTTGATAGAGCAATGATCGAATATAACAAGAAAATGGAAAGTGGAGAGTACGAAGAAACTGATGAAGAATCCGAGTTTGATAATGTGTAA 489 0.4029 MAKKATRSQKRSLSSPTVSASIEHSTRTSSDGRIVLRVKLNEGMKRSSQLNKSGKKPKAKQKKINKKLDAKKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATEKRAEFDRAMIEYNKKMESGEYEETDEESEFDNV 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00809 162 MobiDBLite consensus disorder prediction 1 74 - -
Accr11g00809 162 MobiDBLite consensus disorder prediction 7 32 - -
Accr11g00809 162 CDD HMG-box_AtHMGB1-like 78 134 - -
Accr11g00809 162 Pfam HMG (high mobility group) box 73 142 IPR009071 -
Accr11g00809 162 Gene3D High mobility group box domain 67 157 IPR036910 -
Accr11g00809 162 MobiDBLite consensus disorder prediction 51 70 - -
Accr11g00809 162 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 46 158 IPR031061 -
Accr11g00809 162 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 73 142 IPR009071 -
Accr11g00809 162 SMART hmgende2 72 143 IPR009071 -
Accr11g00809 162 SUPERFAMILY HMG-box 66 147 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00809 Accr-Chr11 13462582 13481711 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Accr11g00809 HMG_box 5.5e-18 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00809 - - vum:124844238 172.555