Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00728 ATGGATGACTTCTTCACCGTCGACGATTTCCCTTACCACGTGGCGCCATTTCCCGACCCCTCTGACCTCATTTACACCCAACCCACGCCGGCTGTTCACCCTCCCGACGTCGCCGACCGCCGCCGGCTTCTTAACCCCCCTCCACAGAAGCTCCGGCCTATTCGAAGCCTTGACCGGTCTTCTTCGCCGCCATCGCTGGTCGCCGAGATTCCTGAGAATGGAGAGCTAGCCGGAGCATCGAACGATTTGGGTTACCTTTGTCACCAGTCAAGTCAGCATCTTGAGTTTCTGGATCAGCGAGCTGAGTCTTGTGAGGAGCTGAGGAAGGAGGCTTCCGATGATGTTGCTGGAAATGATTTCCTTCAGACGGACGCTCCGGCGGGGCTCGGGCCGTCTCATACTTGTGACCCGGATGCCAATGGGTTTAAGCCGAAGCAGGAATCTGGCTCATGTAGGGACAATGATGACGACAATTCATATGAAAGTTTGAAGGAACCCGGGAGTGGAAAGAAAAGAGTAAAGACGATCACAAAGTTTGAAGCTTTTCTGGAAAATTTGGCGATGAAGGTGATGGAAAAGCAAGAGCAGATGCATAAGCAACTGCTAGATATGGTGGAAAAGAAAGAAAGGGAAAGAGCTATGAGAGAAGAAGCTTGGAAGCAAAAGGAGATGGAAAGAATTAAAAAGGATGAGGAGGCCAGAGCTCAAGAAAAATCTAACAACCTGGCTCTAATATCATTAATTCAGAATCTATTGGGCCATGAAATTCAAATCCCCCAATCGGCAGCAACCGGCTCGAGAGAGGAGGATGAAGGCGAAGCTAAAATCCAGAAAGATTTCAAGAGTGATCAGAGTAACAATAGATGGCCAGAACCTGAAGTACAAGCTCTCATAACACTAAGAGCTTCGTCAGAACACAGATTTCAAGGGATGGGATCCAAAGTATCTCTATGGGAGGAGATATCAAAAGCAATGCATAATATGGGTTACAATCGTTCCGCAAAAAAGTGCAAGGAGAAATGGGAAAACATAAACAAGTATTATAAGAGATCAACAGAGAGTAGGAAGAAGCGACGGCTAAATAGCAAAGCTTGCCCATACTTTGATGAGTTGGACATTCTGTACCGAAGCCGGCTCCCAAATATCGGGAATGCCCTCAGCGACACCTCTATGTCGTCAAAGACTGAAAAGGAATAA 1197 0.4762 MDDFFTVDDFPYHVAPFPDPSDLIYTQPTPAVHPPDVADRRRLLNPPPQKLRPIRSLDRSSSPPSLVAEIPENGELAGASNDLGYLCHQSSQHLEFLDQRAESCEELRKEASDDVAGNDFLQTDAPAGLGPSHTCDPDANGFKPKQESGSCRDNDDDNSYESLKEPGSGKKRVKTITKFEAFLENLAMKVMEKQEQMHKQLLDMVEKKERERAMREEAWKQKEMERIKKDEEARAQEKSNNLALISLIQNLLGHEIQIPQSAATGSREEDEGEAKIQKDFKSDQSNNRWPEPEVQALITLRASSEHRFQGMGSKVSLWEEISKAMHNMGYNRSAKKCKEKWENINKYYKRSTESRKKRRLNSKACPYFDELDILYRSRLPNIGNALSDTSMSSKTEKE 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00728 398 Gene3D - 289 350 - -
Accr11g00728 398 SUPERFAMILY Homeodomain-like 286 362 IPR009057 -
Accr11g00728 398 FunFam Trihelix transcription factor GT-2 289 350 - -
Accr11g00728 398 ProSiteProfiles Myb-like domain profile. 281 345 IPR001005 -
Accr11g00728 398 Coils Coil 191 211 - -
Accr11g00728 398 MobiDBLite consensus disorder prediction 148 171 - -
Accr11g00728 398 MobiDBLite consensus disorder prediction 260 288 - -
Accr11g00728 398 PANTHER FI21293P1 132 385 - -
Accr11g00728 398 Pfam Myb/SANT-like DNA-binding domain 287 372 IPR044822 -
Accr11g00728 398 CDD GT1 287 352 - -
Accr11g00728 398 MobiDBLite consensus disorder prediction 266 286 - -
Accr11g00728 398 MobiDBLite consensus disorder prediction 18 68 - -
Accr11g00728 398 Coils Coil 94 114 - -
Accr11g00728 398 MobiDBLite consensus disorder prediction 108 171 - -
Accr11g00728 398 Coils Coil 221 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00728 Accr-Chr11 11492800 11494859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00728 168 377 Trihelix Transcription Factor Family AT5G47660 43.363 1.19e-49 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Accr11g00728 Myb_DNA-bind_4 1e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00728 - - pcin:129285231 601.668