Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00706 ATGTTATTAGATGTGGAAGTGATGGGAAACAAGAGGAGGAGGAGGTGTGGGAGGGTTTTCAGATTCAAGAACTTTGCTGAGGCTGGATATCCTGTGGAGTTTAAAGGGCCATTTCGTGAGAACGTGAATGCTTTGCTTGAGTTTGCCAATTGTGAGTCCAAATACTTAGGCTTTGGAATGCCCATTTGGTCTTTCCAACTTGAGGTTCATCGACACCCTCCTTCTCATGTCTTCTTGTTTGTCATTGAAGAAGCAATCACTGACACATCTTTGAACGGCCATTGCAAGCATTGTCAATATGTAGGATGGGGGAATCATTTCATATGCAATAAGAAGTATCACTTTGTGTTGCCATCAAAGGAGACTTTGGCTGCGAGTCTGAGCTGTGAAGTGGTGTCTGAAGTAATTACTACTGGATCAGCCATGAGCAGCAGCAGCAACAACAATAATGGTAAGTCCAAATTAATAGAATTAGAGGGCCATATGATGCAAGCTGTTTTTCACTCTAACGGATTCGGACATTTGCTCTCTGTCAATGGCCTCGAAACCGGGTCGGATCTTTCCGGACACCAGATCATGGACTTCTGGGATCGTTTGTGCACCGCATTGCAAGCAAGGAAAGTGAGCTTGAATGACGTGTCACAGAAAAAGGGCATGGAACTAAAACTTATAAATGGAATAGCATATGGTGAACCGTGGTTTGGAAGGTGGGGCTACAAATTTGGAAGAGGATGCTTTGGAGTGACTCAAGCTACATACCAGAAGGCCATTGAAGCCATAAGAAGCATCCCACTTTACCTTCTAAACCACCAAATTGGTGACATACCGATCATCTTCTCAAGGTACCAGACACTCTCTGATCAAACCCTAATCACATTTGGTGACCTATTCCACTTCATGTTAGAGCTCAAGTCTCACCTCCCTCGCCGGGAAAACTACTACCCTGATCCCAATTATAACACCACCGCCGGAGGCTTCTCCGTTGAAGGCAATAATTGCCGTTGGTCCCCGAAGAGGATCGAAATGGCAACTAGGGTTATAGTTGAAGCCCTGAAAAGAGCTGAGTTCAGATGGATCTCAAGGCAAGAGGTTAGGGATGCTGCAAGAACCTACATTGGAGACACAGGTTTGCTTGATTTTGTCTTGAAATCTCTTGGAAATCACGTTGTTGGAAACTTCATGGTTCGTAGAAGCTTGAATCCTGTCACGAAAGTTCTTGAATATTGCTTAGAAGACATCTCCAATATTGTTTTCCCCACTCATCAAGAGGGTAACAACAACAATAATAATACCAACAACAACAGAAGCATAAAGGACAGGTACAAAATCACTAGGGGTCAAGTGACAAAGGACATGTTTTATTTGTACAAGTACATTATCCTTAAAGACCCCAAACAAGTACAAGGATCATCATCAATTTTCTCAGCGATCCCATTGGCGGCGAGAATAATTCTTGACACGAAGTTTCTGATCAAAGACTACTTTGGAGAGCTTCTTCCTTTTCAAGATACTAATGATCATCTTGTGGTAGCCGACGGAAAACTAAGGCTTCACTGTACAGTAGTACCTAGAAACTACCCAAACAAGGCGTTAATGATGCCACCCTACGAGTGTATCACACTGAGAAGTAACGCCACCATTAATGAGCTGAAGCTAGAAGTTGAGAGAAACTTCAGAGAGATATATTGGGGATTAAGGAATTTTTCTGTTGATTCGATTAAGAACTTGGAAGGTTGTGGAGGGAATGAGATGGTGTTTGGGATGGTTGAAGTGGGAAGAAAGTTGGTGGTTGAAGGATGGATTGATAATGTTAATGTTAATAATAATAATAATGGAGACAATAAAAACATAGTTATGAGTAACAACGTAGGAGGGATTTATGAGGTTAATTATTATGGTGATAATAATGGTGGGAAGGTTGTGGAATGTAGTTGTGGGACTAAAGAAGACGATGGAGAGAGAATGGTGTGTTGTGATATTTGTGAGACTTGGCAGCATACGAGGTGTGTTCGCATTCCAAATGATGAACCAGTTCCTTCTATATTCCTCTGCAAAACATGTGAACAAGAAATTGTTATGTTCTCTTCCTTGCCATAG 2097 0.4201 MLLDVEVMGNKRRRRCGRVFRFKNFAEAGYPVEFKGPFRENVNALLEFANCESKYLGFGMPIWSFQLEVHRHPPSHVFLFVIEEAITDTSLNGHCKHCQYVGWGNHFICNKKYHFVLPSKETLAASLSCEVVSEVITTGSAMSSSSNNNNGKSKLIELEGHMMQAVFHSNGFGHLLSVNGLETGSDLSGHQIMDFWDRLCTALQARKVSLNDVSQKKGMELKLINGIAYGEPWFGRWGYKFGRGCFGVTQATYQKAIEAIRSIPLYLLNHQIGDIPIIFSRYQTLSDQTLITFGDLFHFMLELKSHLPRRENYYPDPNYNTTAGGFSVEGNNCRWSPKRIEMATRVIVEALKRAEFRWISRQEVRDAARTYIGDTGLLDFVLKSLGNHVVGNFMVRRSLNPVTKVLEYCLEDISNIVFPTHQEGNNNNNNTNNNRSIKDRYKITRGQVTKDMFYLYKYIILKDPKQVQGSSSIFSAIPLAARIILDTKFLIKDYFGELLPFQDTNDHLVVADGKLRLHCTVVPRNYPNKALMMPPYECITLRSNATINELKLEVERNFREIYWGLRNFSVDSIKNLEGCGGNEMVFGMVEVGRKLVVEGWIDNVNVNNNNNGDNKNIVMSNNVGGIYEVNYYGDNNGGKVVECSCGTKEDDGERMVCCDICETWQHTRCVRIPNDEPVPSIFLCKTCEQEIVMFSSLP 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00706 698 CDD PHD_MMD1_like 642 687 - -
Accr11g00706 698 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 632 692 IPR013083 -
Accr11g00706 698 SUPERFAMILY FYVE/PHD zinc finger 637 690 IPR011011 -
Accr11g00706 698 ProSitePatterns Zinc finger PHD-type signature. 643 687 IPR019786 -
Accr11g00706 698 SMART PHD_3 642 688 IPR001965 -
Accr11g00706 698 ProSiteProfiles Zinc finger PHD-type profile. 640 690 IPR019787 -
Accr11g00706 698 Pfam PHD-finger 643 689 IPR019787 -
Accr11g00706 698 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 14 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00706 Accr-Chr11 10727458 10730467 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00706 11 698 PHD Transcription Factor Family AT5G22260 50.994 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Accr11g00706 PHD 1.4e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00706 K26271 - gmx:100780210 886.715