Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00686 ATGGGAATGGAACCTGGCAAGCTCTTCATTGGTGGAATTTCATGGGACACAAATGAAGAACGACTCAGACAGTACTTTCAGAATTTTGGAGATGTGGTGGAAGCAGTGATTATGAAGGATCGGACCACAGGGCGTGCTCGTGGTTTTGGATTTATTGTTTTCTCTGATCCTTCTGTTGCTGAACAAGTTGTTATGGAAAAACATGTCATCGATGGTAGAACTGTTGAAGCGAAAAAGGCTGTCCCTAGGGATGATCAGAACATTTCTAACAGAAGCAACAGCAGCATTCATGGATCACCGGGTCCAACCCGCACGAAGAAGATATTTGTTGGAGGTCTTGCGTCCACTGTTACTGAGAGTGACTTCAAGAAGTACTTTGATCAATTTGGAACAATTACAGATGTAGTTGTGATGTATGACCATAACACTCAAAGACCAAGAGGTTTTGGTTTCATCACCTATGACTCTGAGGAAGCAGTGGATAAGGTTCTGTATAAAACATTCCATGAACTGAACGGTAAGATGGTTGAGGTTAAGCGGGCTGTTCCGAAGGAATTATCCCCAGCTCCAAGTAGAGGCCAATTAGCTGGATATAATAACTATGGTTTAAGTAGAGTTAGTGGCTTTTCTAATGGTTTCATTCAGGGATATAATCCTAGCTTGGTTGGAGGGCATGGACTTAGAGCAGACAGCAGATTTAGTCCTGTTTCTGTTGGTCGAAATGGATATCCTCCATTAAGTCCCAGTTATGGGACAGGATTCAATTTTGAACCAGCATTTAGTCAAAATGCAAATTCAAACTTAACTTCTTCCCTTATGTTAGGACGAGCCTTGAACCCTTCATACAATGGAAATTCAAGCAGGTACCATAATGTCATGGGGTACACTGGTACAAGTGTAGGAAACAACTCGGCAAACCAGAATTTGTGGGGGAATGACAGTATTAGCTTAGCTAATAATCCTACGAATACCAATGGTTTTCAGGGGTATGGAAGTCAGAATTCAGGCATGGGCTCTTTTGGTACTATTGGAACACTGTGGAGTTCCTCTCCTAATGCTGATCAAGCCGGAACTGTTGGCTCTGGCTATGGTAAGGGCACTCTTAACTATGGCCCTGGAGATGTTAATTTTAGGCCAAAAGCAGTAGGATATGGAAAAGGTAGTAGTGATGCCATTGCTGAATCAGTGTCATCATATGCTCTATCCAATGGAAGTTTTGATGGGGCATATAAAGACATTTACGAAGCTGGGTCATTTTTTGGTGACCACACCTGGAGATCGTCACCTTCAGAGCTAGAAGATACTGGTTCTCTTGGTTATGACCTTGGAACTGCTGTTTCAGATTTGATAAGCAAAAGCTCTGGTGGCCACATTGGGGCTTATGCTGTTGCCAATAGACAATCAAATAGAGGAATTGCTGCATAG 1425 0.426 MGMEPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFIVFSDPSVAEQVVMEKHVIDGRTVEAKKAVPRDDQNISNRSNSSIHGSPGPTRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNGKMVEVKRAVPKELSPAPSRGQLAGYNNYGLSRVSGFSNGFIQGYNPSLVGGHGLRADSRFSPVSVGRNGYPPLSPSYGTGFNFEPAFSQNANSNLTSSLMLGRALNPSYNGNSSRYHNVMGYTGTSVGNNSANQNLWGNDSISLANNPTNTNGFQGYGSQNSGMGSFGTIGTLWSSSPNADQAGTVGSGYGKGTLNYGPGDVNFRPKAVGYGKGSSDAIAESVSSYALSNGSFDGAYKDIYEAGSFFGDHTWRSSPSELEDTGSLGYDLGTAVSDLISKSSGGHIGAYAVANRQSNRGIAA 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00686 474 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Accr11g00686 474 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Accr11g00686 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Accr11g00686 474 Gene3D - 5 88 IPR012677 -
Accr11g00686 474 SUPERFAMILY RNA-binding domain, RBD 4 101 IPR035979 GO:0003676
Accr11g00686 474 CDD RRM2_Hrp1p 107 184 - -
Accr11g00686 474 SUPERFAMILY RNA-binding domain, RBD 100 209 IPR035979 GO:0003676
Accr11g00686 474 Gene3D - 103 191 IPR012677 -
Accr11g00686 474 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Accr11g00686 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Accr11g00686 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Accr11g00686 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Accr11g00686 474 MobiDBLite consensus disorder prediction 80 102 - -
Accr11g00686 474 SMART rrm1_1 7 78 IPR000504 GO:0003723
Accr11g00686 474 SMART rrm1_1 107 179 IPR000504 GO:0003723
Accr11g00686 474 MobiDBLite consensus disorder prediction 86 101 - -
Accr11g00686 474 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 4 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00686 Accr-Chr11 10487894 10490664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00686 8 185 Eukaryotic Initiation Factors Gene Family AT2G36660 30.688 3.65e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00686 K14411 - cave:132171089 672.159