Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00685 ATGGTTTCTCTGGAGGATTCTCACTCCAATTCCAATCGTTTCCCTTTAACCCGAAGCTATTACTCTACTACCACTTCCGCCAACAATTCTTCATCCAGAATCCAGCGGCACACTGGAAGGTCTATGCGAACCATTCGCTCTAATTTCTTCCAGGATGACCATAGCTGCTCCTTCACCACGGCCACCGAGAAATCTACTTGCCTGTCGGAAACCATGACGGATTCGGTCATCGACCTCAGGCTTGGCGAACTCGCATCGAAGAACAACAAATCTGCGAAATCTTCTTCTACGGAGGAGGAGTTGCTTGATCTTTCTCAAGCTTTCAGTGATTTCTCGGCTTGTAGCAGCGATATTTCTGGGGAGCTGCAGAGGCTGGCGAGTTTGCCGTTGCCGGAGAATGTGCTGAAGGGCGATGCCAGTGGTGCGAACAAAGAGCCGGAGCCAGAGCCGTGCCTGGGGTTCCTGCAGAGAGAGAATTTCTCTACTGAGATTATTGAGAGTATTTCGCCAGAGGATCTTCAGCCGGCCGTGAAGATCTGTATCGATGGGCTACTATCAAAGTCGGTTGCTGTGACACGATCTGCTGCGGCTAAGCTCAGGCTGCTGGCGAAGAATCGAGCGGATAATAGAGCTCTGATCGGTGAGTCTGGCGCGGTTCCCGCTTTGGTTCCCCTGCTTCGTTGCAGTGATCCGTGGACGCAGGAACACGCCGTCACGGCCTTGCTGAATCTCTCGCTTCACGAAGATAACAAGATGCTGATTACCAATGCTGGAGCTATTAAGTCACTGATTTATGTGCTCAAAACCGGAACGGAGACTTCGAAGCAGAACGCGGCATGTGCGCTTCTGAGCCTTGCGTTGGTTGAAGAAAACAAGAGTTCCATTGGGGCTAGTGGGGCAATACCACCGCTTGTTTCCCTGCTGTTGAGTGGCTCCAGCAGGGGAAAGAAGGACGCTCTGACGACGCTGTATAAGCTCTGCTCTATAAAGCCAAACAAGGAGAGGGCGGTGAGCGCCGGAGCAGTGAAGCCTCTTGTGGAGATGGTGGCAGAGCAAGGGACGGGTATGGCTGAGAAGGCAATGGTGATACTTAGTAGCTTGGCCGCGATTCCGGAAGGGAAGGAAGCAATTGTTGAAGAAGGCGGAATAGCTGCTCTTGTTGAGGCGATTGAAGATGGCTCTGTGAAGGGAAAGGAATTTGCTGTTGTGACGCTTTTACAGCTCTGTGCTGACAGTGTGAGGAATAGAGGGTTGCTTGTAAGGGAGGGTGGAATACCCCCTCTGGTTGCTCTTTCTCAGACCGGAAGTGTTAAAGCTAAGCACAAGGCAGAAACGCTCCTTGGGTATTTGAGAGAATCAAGACAAGAAGCATCCACTTCAAGTGCTTAG 1389 0.5148 MVSLEDSHSNSNRFPLTRSYYSTTTSANNSSSRIQRHTGRSMRTIRSNFFQDDHSCSFTTATEKSTCLSETMTDSVIDLRLGELASKNNKSAKSSSTEEELLDLSQAFSDFSACSSDISGELQRLASLPLPENVLKGDASGANKEPEPEPCLGFLQRENFSTEIIESISPEDLQPAVKICIDGLLSKSVAVTRSAAAKLRLLAKNRADNRALIGESGAVPALVPLLRCSDPWTQEHAVTALLNLSLHEDNKMLITNAGAIKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLSGSSRGKKDALTTLYKLCSIKPNKERAVSAGAVKPLVEMVAEQGTGMAEKAMVILSSLAAIPEGKEAIVEEGGIAALVEAIEDGSVKGKEFAVVTLLQLCADSVRNRGLLVREGGIPPLVALSQTGSVKAKHKAETLLGYLRESRQEASTSSA 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00685 462 FunFam U-box domain-containing protein 4 316 457 - -
Accr11g00685 462 Pfam Armadillo/beta-catenin-like repeat 208 245 IPR000225 GO:0005515
Accr11g00685 462 Pfam Armadillo/beta-catenin-like repeat 290 328 IPR000225 GO:0005515
Accr11g00685 462 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 340 382 IPR000225 GO:0005515
Accr11g00685 462 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 217 259 IPR000225 GO:0005515
Accr11g00685 462 PANTHER U BOX DOMAIN-CONTAINING 136 450 - -
Accr11g00685 462 Gene3D - 161 460 IPR011989 -
Accr11g00685 462 SMART arm_5 329 369 IPR000225 GO:0005515
Accr11g00685 462 SMART arm_5 206 246 IPR000225 GO:0005515
Accr11g00685 462 SMART arm_5 247 287 IPR000225 GO:0005515
Accr11g00685 462 SMART arm_5 412 452 IPR000225 GO:0005515
Accr11g00685 462 SMART arm_5 288 328 IPR000225 GO:0005515
Accr11g00685 462 SMART arm_5 370 410 IPR000225 GO:0005515
Accr11g00685 462 SUPERFAMILY ARM repeat 172 451 IPR016024 -
Accr11g00685 462 FunFam U-box domain-containing protein 4 163 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00685 Accr-Chr11 10479843 10481788 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00685 154 455 U-box Gene Family AT2G23140 47.419 1.14e-82 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00685 - - qsa:O6P43_012014 713.761