Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00620 ATGGACTTCGTCGACAACAACGATGGTGGTTCCTCTTCTTGTTCTTCTGTGAAAGCCAAGATCATTGCTCATCCTCACTACCCTCGCCTCCTCGCTGCTTACGTCAAATGTCAAAAGGTAGGGGCCCCGCCGGCAACAGTAGCGAGGCTAGATGAAGCATATGCGGCGGCGGCGGCGGCGGCAATGAGCTGCAACGGAGTTGGGTCAGGCTGCGCCGGCGAAGATGCGGCGCTGGATCAGTTCATGGAGGCATATTGTGAGATGTTGACAAAGTACGAACAAGAGCTCTCAAAACCATTTGAGGAAGCTGTGTTCTTCCTTCAGACCATCGAGCGTCAATTAAAAGCTCTCACCGTTGATTCTCCGATCAACTTTGCTTGTAATGAGAATACAGAATCATCTGAAGATGAGATGGATGTTGAAAACAGCCGAAGCATGGTTGATCCGCAGGCGGATGATAGGGAACTGAAGGATCGGCTTCTGCGAAAGTACAGCGGATGCTTGGGCAGTCTGAAACAGGAGTTCATGAAGAAGAGGAAGAAGGGGAAGCTGCCTAAAGAAGCAAGGCAACAATTACTTGGTTGGTGGAATGGACACTATAAATGGCCTTACCCTTCTGAATCACAGAAGCTGGCACTTGCAGAATCAACAGGGCTGGATCAGAAGCAAATAAACAACTGGTTCATCAATCAAAGAAAACGTCACTGGAAGCCTTCAGAAGACATGCAGTTCGTGGTGGTGGACCCAATGCATCCTCATCACTACTTCATGGACAACGTTCTGGCCTCTCCATATCCCTTGGATTTCTCTCACGTTATGCTCTGA 825 0.4921 MDFVDNNDGGSSSCSSVKAKIIAHPHYPRLLAAYVKCQKVGAPPATVARLDEAYAAAAAAAMSCNGVGSGCAGEDAALDQFMEAYCEMLTKYEQELSKPFEEAVFFLQTIERQLKALTVDSPINFACNENTESSEDEMDVENSRSMVDPQADDRELKDRLLRKYSGCLGSLKQEFMKKRKKGKLPKEARQQLLGWWNGHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPMHPHHYFMDNVLASPYPLDFSHVML 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00620 274 SMART KNOX2_2 68 119 IPR005541 GO:0003677|GO:0005634
Accr11g00620 274 Pfam KNOX1 domain 17 54 IPR005540 GO:0003677|GO:0005634
Accr11g00620 274 Pfam KNOX2 domain 72 118 IPR005541 GO:0003677|GO:0005634
Accr11g00620 274 ProSiteProfiles 'Homeobox' domain profile. 175 238 IPR001356 GO:0003677
Accr11g00620 274 SMART HOX_1 177 242 IPR001356 GO:0003677
Accr11g00620 274 SMART ELK_2 155 176 IPR005539 GO:0003677
Accr11g00620 274 FunFam Homeobox protein knotted-1-like 2 180 242 - -
Accr11g00620 274 ProSiteProfiles ELK domain profile. 155 175 IPR005539 GO:0003677
Accr11g00620 274 SUPERFAMILY Homeodomain-like 177 254 IPR009057 -
Accr11g00620 274 ProSitePatterns 'Homeobox' domain signature. 213 236 IPR017970 GO:0000981|GO:0006355
Accr11g00620 274 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 22 244 - -
Accr11g00620 274 CDD homeodomain 187 239 IPR001356 GO:0003677
Accr11g00620 274 SMART KNOX1_2 15 59 IPR005540 GO:0003677|GO:0005634
Accr11g00620 274 Gene3D - 173 244 - -
Accr11g00620 274 Pfam Homeobox KN domain 195 234 IPR008422 GO:0003677|GO:0006355
Accr11g00620 274 Pfam ELK domain 155 176 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00620 Accr-Chr11 9215286 9221521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00620 9 274 Homeobox Transcription Factor Family AT1G62360 70.714 1.97e-116 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Accr11g00620 KNOX2 2.4e-20 No_clan