Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00603 ATGGCCACCTTAACACCAATAATCCTGCTCCTTTTTTCTCGCTTTCTTCTTCCATACTTGACTACAACCTCGTACGCAGATTCAACAGACAATAATTACCTCAATACTGCCGATCTCAATTCAAGCTATACTCTCGTATCTGAGAACCTTATTCTCAACACCATAGATTCTTGTTGGAGATCCAACTCAAACTGGGCATCGAACCGGCAAGCCCTGGCTCGTTGTGCTGTTGGGTTTGGTAAAGATGCCATTGGAGGTAAGTTTGGTGCTATATATGAGGTCAATGATGCCTCCGATGATCCTGTGAACCCTAAACCAGGGACACTTCGTTATGGTGTGATCCAAACACAGCCTCTTTGGATAATATTCGTCAAGGACATGGTTATTACCCTGGAGAACGAGCTTATAGTGAATAGCTATAAGACCATTGATGGCAGAGGAGCCAAAGTGGAGATTGCTTATGGACCTTGCATTACCATTCAAGATGTTACTCACGTCATTATTCATGGGATTAGCATCCATGATTGTAAGCAAGGAAAAGTTGGGATGGTTAGGAGTAATGAAGAGCATGTGGGGCATAGAGGAGGCTCAGATGGAGATGGCATTGCCATATTTGGTTCTTCCAATATTTGGATCGATCATTGCTTCTTGGCTCGTTGTACAGATGGCCTTATTGATATTATTCATGCCTCAACTTCTGTCACTATCTCTAACAATTACTTTACCCAGCATGACAAAGTAATGCTGCTAGGGCACAACGATGAATTTACAGCCGATAGAATAATGAAGGTGACAGTAGCCTTCAATCGCTTTGCCAGCGGCCTCGTAGAGAGAATGCCAAGGGTGAGATTTGGGTATGCGCATGTGGTGAACAACCAATATGAGGGGTGGATTATGTACGCCATTGGAGGCAGTGCCGACCCTACCATTTTAAGTGAAGGCAACTACTTCATAGGTCCAAACAACGTTGCTGCAAAACAGGTTACGAAGAGGGAAACAATTGATAAGAGCTGGAATGAGTGGAAATGGAGGACGTACAAGGATAAATTCATGAATGGAGCGTATTTTGTTCCATCAGGATATGGAAGTTGTGCCCCTTATTATTCAGCTTCACAATCTTTTGTAGCTGCTTCTGCCAAATTGGTCCCTCAATTAACTCTCAGTGCTGGTCCACTTCCTTGTGTTCTTGGCAAGGCTTGTTCATAA 1206 0.4353 MATLTPIILLLFSRFLLPYLTTTSYADSTDNNYLNTADLNSSYTLVSENLILNTIDSCWRSNSNWASNRQALARCAVGFGKDAIGGKFGAIYEVNDASDDPVNPKPGTLRYGVIQTQPLWIIFVKDMVITLENELIVNSYKTIDGRGAKVEIAYGPCITIQDVTHVIIHGISIHDCKQGKVGMVRSNEEHVGHRGGSDGDGIAIFGSSNIWIDHCFLARCTDGLIDIIHASTSVTISNNYFTQHDKVMLLGHNDEFTADRIMKVTVAFNRFASGLVERMPRVRFGYAHVVNNQYEGWIMYAIGGSADPTILSEGNYFIGPNNVAAKQVTKRETIDKSWNEWKWRTYKDKFMNGAYFVPSGYGSCAPYYSASQSFVAASAKLVPQLTLSAGPLPCVLGKACS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00603 401 Gene3D - 52 393 IPR012334 -
Accr11g00603 401 PRINTS Pollen allergen Amb family signature 300 319 IPR018082 -
Accr11g00603 401 PRINTS Pollen allergen Amb family signature 75 92 IPR018082 -
Accr11g00603 401 PRINTS Pollen allergen Amb family signature 341 365 IPR018082 -
Accr11g00603 401 PRINTS Pollen allergen Amb family signature 198 219 IPR018082 -
Accr11g00603 401 PRINTS Pollen allergen Amb family signature 278 297 IPR018082 -
Accr11g00603 401 PRINTS Pollen allergen Amb family signature 98 123 IPR018082 -
Accr11g00603 401 PRINTS Pollen allergen Amb family signature 134 150 IPR018082 -
Accr11g00603 401 PRINTS Pollen allergen Amb family signature 371 394 IPR018082 -
Accr11g00603 401 SUPERFAMILY Pectin lyase-like 53 391 IPR011050 -
Accr11g00603 401 SMART amb_all 126 323 IPR002022 -
Accr11g00603 401 Pfam Pectate lyase 135 317 IPR002022 -
Accr11g00603 401 PANTHER PECTATE LYASE 18-RELATED 43 397 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00603 Accr-Chr11 9022462 9024828 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00603 19 400 Polysaccharide Lyase AT1G11920 66.230 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00603 K01728 - gmx:100803229 603.594