Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00602 ATGGCTACCTTCACACCACTAGTTTTCTTCCTTATAGCAATATCTTTCCTACCACTTATAGCTTCAAGCTCATCATATGCCTACACTACTCCCATGTACCTCATCCTCAACACCATAGACTCTTGCTGGAGATCCAACTCAAACTGGGCATCAAATCGCCAAACCTTAGCTGATTGTGCTGTTGGGTTTGGCAAAGATGCCATTGGAGGTAAGTTTGGTGCTATATATGACGTCACTGATGCCTCCGATGACCCTGTGAACCCCAAACCAGGGACACTTCGTTATGGTGTGATCCAAACACAGCCTCTTTGGATCATATTCGCCAAGGACATGGTTATTACCCTCAAGAACGAGCTTATAGTGAATAGCTATAAGACCATTGATGGTAGAGGAGCCAAAGTGGAGATTGCTTATGGACCTTGCATTACCATTCAATATGTTACTCACGTCATTATTCATGGGATTAGCATCCACGATTGTAAGCCAGGAAAAGCTGGGATGGTGAGAAGCAGTAGTGATCATGTAGGACATCGTCTAGGTTCAGATGGAGACGCCATTAGCGTATTTGGTTCCTCAAATGTTTGGGTTGACCATTGTTTCCTTGCTCGTTGTGTCGACGGTCTCATTGATATTATTCACGCCTCAACTTTCATCACCATTTCCAACAATTACTTCACACAGCACGATAAAGTGATGCTGTTAGGACACAGCGATGGATACAAAGCAGATAAGGTAATGAAAGTGACAATAGCTTTCAACCATTTTGCTAGCGGCCTGTATGAAAGGATGCCAAGGGTAAGATTTGGGTACGCCCATGTGGTCAACAACAGATATGATGGCTGGAGGATGTATGCCATTGGTGGTAGTGCTGGACCAACCATTCTGAGTGAAGGGAACTACTTTATGGCTCCAAGTAACCCTAGTGTGAAACAGGTTACCAAGAGGATACTGAAGGGAAACTGGAAGAATTGGAAATGGAGGACTTCTAAAGATGCATTTGTGAATGGAGCCTATTTTGTTCCATCTGGGTATGGAAGTTGTGCCCCTTACTATTCAACTTCTCAATCTTTTGTTGCTGCTTCAGCATCCTTGGTGCCTTCATTGACCCTTCAAGCTGGTTCTCTGAGTTGTATTGTTGGGAAAGCTTGTTAA 1152 0.4384 MATFTPLVFFLIAISFLPLIASSSSYAYTTPMYLILNTIDSCWRSNSNWASNRQTLADCAVGFGKDAIGGKFGAIYDVTDASDDPVNPKPGTLRYGVIQTQPLWIIFAKDMVITLKNELIVNSYKTIDGRGAKVEIAYGPCITIQYVTHVIIHGISIHDCKPGKAGMVRSSSDHVGHRLGSDGDAISVFGSSNVWVDHCFLARCVDGLIDIIHASTFITISNNYFTQHDKVMLLGHSDGYKADKVMKVTIAFNHFASGLYERMPRVRFGYAHVVNNRYDGWRMYAIGGSAGPTILSEGNYFMAPSNPSVKQVTKRILKGNWKNWKWRTSKDAFVNGAYFVPSGYGSCAPYYSTSQSFVAASASLVPSLTLQAGSLSCIVGKAC 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00602 383 PRINTS Pollen allergen Amb family signature 262 281 IPR018082 -
Accr11g00602 383 PRINTS Pollen allergen Amb family signature 82 107 IPR018082 -
Accr11g00602 383 PRINTS Pollen allergen Amb family signature 118 134 IPR018082 -
Accr11g00602 383 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Accr11g00602 383 PRINTS Pollen allergen Amb family signature 354 377 IPR018082 -
Accr11g00602 383 PRINTS Pollen allergen Amb family signature 182 203 IPR018082 -
Accr11g00602 383 PRINTS Pollen allergen Amb family signature 324 348 IPR018082 -
Accr11g00602 383 PRINTS Pollen allergen Amb family signature 59 76 IPR018082 -
Accr11g00602 383 SMART amb_all 110 307 IPR002022 -
Accr11g00602 383 Pfam Pectate lyase 117 301 IPR002022 -
Accr11g00602 383 PANTHER PECTATE LYASE 18-RELATED 35 381 IPR045032 GO:0030570
Accr11g00602 383 Gene3D - 36 376 IPR012334 -
Accr11g00602 383 SUPERFAMILY Pectin lyase-like 37 373 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00602 Accr-Chr11 9014328 9017936 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00602 4 383 Polysaccharide Lyase AT1G11920 68.241 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00602 K01728 - gmx:100799106 603.208