Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00560 ATGATGCAACCTGGTTCTGGCATGGCTCCCCCAAACATGGGCCAACAGCCTCCTCAGCAGTACCCGCAGCAGCAACATCCCTACATGATGATGCCACCGCAGGCTCAGGCGCCGCCGATGTGGGCACCCTCTGTTCAACCACCGCCACAGTCGGTCGCTCCACTGCCGGCAACTCAAACCGCCCAGCCCACAAGCGCTGACGAGGTCCGTACTCTTTGGATCGGCGATTTGCAGTTCTGGATGGACGAGAACTATTTGTACAATTGTTTTGCTCATACGGGCGAGGTGGTCTCGGCGAAAGTTATTCGAAACAAGCAAACTAACCAATCTGATGGTTATGGGTTTATTGAGTTTCTCACACGCGCGGCCGCTGAGAGAATACTTCAAACATTTAATGGAACCATTATGCCAAATGGTGGGCAAACCTTCAGATTGAACTGGGCAACTTTTAGTTCGGGTGAGAAGAGGCACGATGATACTCCAGATTACACAATCTTTGTTGGAGATTTAGCTGCGGATGTTACAGATTACATGCTCCAGGAGACGTTTCGGGCTAGATATCCCTCAATTAAAGATGAAAATGAACAAATACGAGCTATGACGGAGATGCAAGGTGTATTATGTTCAACAAGACCCATGCGGATTGGACCAGCCACTAACAAAAACCCTGGCACTCTGCCAAAAGCTTCATACCAGAATCCTCAAGGAGCACAGAACGAGCATGATCCTAATAATTCAACTATTTTTGTGGGGAATTTGGATCCTAATGTAACGGATGATCATCTTAGGCAAGTTTTTGGCCAACATGGGGAGTTAGTACATGTTAAGATTCCAGCAGGCAAGCGTTGTGGGTTTGTTCAATATGCTGACAGGAGCTGTGCGGAAGAGGCACTGAGGATGTTAAATGGAACAACATTGGGTGGGCAGAGTGTTCGTCTCTCATGGGGCCGGAGTCCTGCAAACAAACAGACTCAGCCAGATGCAACCCAGTGGAATGGTGCTGCTGGTTATTATGGATACGCTCAGGGGTACGAAAACTATGGATATGCTCCCGCAGCTGCACAGGACCCCAACATGTATGGAAGCTATCCTGGGTACACCAATTACCAGCCACCACAGCAGCAGCAGCAGCAGCTAGGTGGATATAGTTGA 1152 0.4913 MMQPGSGMAPPNMGQQPPQQYPQQQHPYMMMPPQAQAPPMWAPSVQPPPQSVAPLPATQTAQPTSADEVRTLWIGDLQFWMDENYLYNCFAHTGEVVSAKVIRNKQTNQSDGYGFIEFLTRAAAERILQTFNGTIMPNGGQTFRLNWATFSSGEKRHDDTPDYTIFVGDLAADVTDYMLQETFRARYPSIKDENEQIRAMTEMQGVLCSTRPMRIGPATNKNPGTLPKASYQNPQGAQNEHDPNNSTIFVGNLDPNVTDDHLRQVFGQHGELVHVKIPAGKRCGFVQYADRSCAEEALRMLNGTTLGGQSVRLSWGRSPANKQTQPDATQWNGAAGYYGYAQGYENYGYAPAAAQDPNMYGSYPGYTNYQPPQQQQQQLGGYS 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00560 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 137 IPR000504 GO:0003723
Accr11g00560 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 248 311 IPR000504 GO:0003723
Accr11g00560 383 SMART rrm1_1 247 314 IPR000504 GO:0003723
Accr11g00560 383 SMART rrm1_1 71 146 IPR000504 GO:0003723
Accr11g00560 383 SMART rrm1_1 164 216 IPR000504 GO:0003723
Accr11g00560 383 MobiDBLite consensus disorder prediction 9 30 - -
Accr11g00560 383 SUPERFAMILY RNA-binding domain, RBD 231 343 IPR035979 GO:0003676
Accr11g00560 383 MobiDBLite consensus disorder prediction 1 64 - -
Accr11g00560 383 FunFam Polyadenylate-binding protein RBP45C 224 351 - -
Accr11g00560 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 150 IPR000504 GO:0003723
Accr11g00560 383 MobiDBLite consensus disorder prediction 361 383 - -
Accr11g00560 383 MobiDBLite consensus disorder prediction 216 244 - -
Accr11g00560 383 FunFam Polyadenylate-binding protein RBP45 10 155 - -
Accr11g00560 383 MobiDBLite consensus disorder prediction 32 54 - -
Accr11g00560 383 MobiDBLite consensus disorder prediction 360 383 - -
Accr11g00560 383 SUPERFAMILY RNA-binding domain, RBD 69 222 IPR035979 GO:0003676
Accr11g00560 383 Gene3D - 8 158 IPR012677 -
Accr11g00560 383 Gene3D - 225 328 IPR012677 -
Accr11g00560 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 246 318 IPR000504 GO:0003723
Accr11g00560 383 MobiDBLite consensus disorder prediction 223 244 - -
Accr11g00560 383 CDD RRM1_SECp43_like 71 151 - -
Accr11g00560 383 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 61 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00560 Accr-Chr11 8422864 8426337 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00560 69 328 Eukaryotic Initiation Factors Gene Family AT2G23350 26.990 1.17e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00560 - - gmx:100796848 556.599