Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00559 ATGATGCAACCTGGTTCTGGCATGGCTCCCCCAAACATGGGCCAACAGCCTCCTCAGCAGTACCCGCAGCAGCAACATCCCTACATGATGATGCCACCGCAGGCTCAGGCGCCGCCGATGTGGGCACCCTCTGTTCAACCACCGCCACAGTCGGTCGCTCCACTGCCGGCAACTCAAACCGCCCAGCCCACAAGCGCTGACGAGGTCCGTACTCTTTGGATCGGCGATTTGCAGTTCTGGATGGACGAGAACTATTTGTACAATTGTTTTGCTCATACGGGCGAGGTGGTCTCGGCGAAAGTTATTCGAAACAAGCAAACTAACCAATCTGATGGTTATGGGTTTATTGAGTTTCTCACACGCGCGGCCGCTGAGAGAATACTTCAAACATTTAATGGAACCATTATGCCAAATGGTGGGCAAACCTTCAGATTGAACTGGGCAACTTTTAGTTCGGGTGAGAAGAGGCACGATGATACTCCAGATTACACAATCTTTGTTGGAGATTTAGCTGCGGATGTTACAGATTACATGCTCCAGGAGACGTTTCGGGCTAGATATCCCTCAATTAAAGGTGCAAAAGTTGTTATCGATAGACTCACTGGGAGGACAAAGGGTTACGGTTTTGTTAGGTTTGCAGATGAAAATGAACAAATACGAGCTATGACGGAGATGCAAGGTGTATTATGTTCAACAAGACCCATGCGGATTGGACCAGCCACTAACAAAAACCCTGGCACTCTGCCAAAAGCTTCATACCAGAATCCTCAAGGAGCACAGAACGAGCATGATCCTAATAATTCAACTATTTTTGTGGGGAATTTGGATCCTAATGTAACGGATGATCATCTTAGGCAAGTTTTTGGCCAACATGGGGAGTTAGTACATGTTAAGATTCCAGCAGGCAAGCGTTGTGGGTTTGTTCAATATGCTGACAGGAGCTGTGCGGAAGAGGCACTGAGGATGTTAAATGGAACAACATTGGGTGGGCAGAGTGTTCGTCTCTCATGGGGCCGGAGTCCTGCAAACAAACAGACTCAGCCAGATGCAACCCAGTGGAATGGTGCTGCTGGTTATTATGGATACGCTCAGGGGTACGAAAACTATGGATATGCTCCCGCAGCTGCACAGGACCCCAACATGTATGGAAGCTATCCTGGGTACACCAATTACCAGCCACCACAGCAGCAGCAGCAGCAGCTAGGTGGATATAGTTGA 1218 0.4885 MMQPGSGMAPPNMGQQPPQQYPQQQHPYMMMPPQAQAPPMWAPSVQPPPQSVAPLPATQTAQPTSADEVRTLWIGDLQFWMDENYLYNCFAHTGEVVSAKVIRNKQTNQSDGYGFIEFLTRAAAERILQTFNGTIMPNGGQTFRLNWATFSSGEKRHDDTPDYTIFVGDLAADVTDYMLQETFRARYPSIKGAKVVIDRLTGRTKGYGFVRFADENEQIRAMTEMQGVLCSTRPMRIGPATNKNPGTLPKASYQNPQGAQNEHDPNNSTIFVGNLDPNVTDDHLRQVFGQHGELVHVKIPAGKRCGFVQYADRSCAEEALRMLNGTTLGGQSVRLSWGRSPANKQTQPDATQWNGAAGYYGYAQGYENYGYAPAAAQDPNMYGSYPGYTNYQPPQQQQQQLGGYS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00559 405 Gene3D - 8 153 IPR012677 -
Accr11g00559 405 FunFam Polyadenylate-binding protein RBP45C 247 350 - -
Accr11g00559 405 Gene3D - 249 350 IPR012677 -
Accr11g00559 405 FunFam Polyadenylate-binding protein RBP45C 155 246 - -
Accr11g00559 405 MobiDBLite consensus disorder prediction 9 30 - -
Accr11g00559 405 FunFam Polyadenylate-binding protein RBP45 10 154 - -
Accr11g00559 405 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 61 344 - -
Accr11g00559 405 MobiDBLite consensus disorder prediction 1 64 - -
Accr11g00559 405 MobiDBLite consensus disorder prediction 382 405 - -
Accr11g00559 405 SUPERFAMILY RNA-binding domain, RBD 253 365 IPR035979 GO:0003676
Accr11g00559 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 150 IPR000504 GO:0003723
Accr11g00559 405 SMART rrm1_1 269 336 IPR000504 GO:0003723
Accr11g00559 405 SMART rrm1_1 71 146 IPR000504 GO:0003723
Accr11g00559 405 SMART rrm1_1 164 238 IPR000504 GO:0003723
Accr11g00559 405 SUPERFAMILY RNA-binding domain, RBD 53 149 IPR035979 GO:0003676
Accr11g00559 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 242 IPR000504 GO:0003723
Accr11g00559 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 333 IPR000504 GO:0003723
Accr11g00559 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 137 IPR000504 GO:0003723
Accr11g00559 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 165 228 IPR000504 GO:0003723
Accr11g00559 405 MobiDBLite consensus disorder prediction 32 54 - -
Accr11g00559 405 Gene3D - 154 248 IPR012677 -
Accr11g00559 405 MobiDBLite consensus disorder prediction 383 405 - -
Accr11g00559 405 SUPERFAMILY RNA-binding domain, RBD 158 252 IPR035979 GO:0003676
Accr11g00559 405 CDD RRM1_SECp43_like 71 151 - -
Accr11g00559 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 340 IPR000504 GO:0003723
Accr11g00559 405 CDD RRM2_SECp43_like 162 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00559 Accr-Chr11 8422864 8426337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00559 69 350 Eukaryotic Initiation Factors Gene Family AT2G23350 28.966 3.57e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00559 - - gmx:100796848 610.912