LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr11g00534	ATGGACCCTCAAAATTTTCTATTTTCCCGAGAAAACCCTAGAACCCACTCGTTCTCAACTTCTCCAATTGTCTCTTCAAAACCCAATATCGCCAATGAGATCGCGCAGAAGCCGTCCCCTTCGATCCTGGTGGGCCGGTTCAAGGCTTTGCTAAAGGAACGCGAGGATGAATTCAGGGCTTCCTCTGGTGATAAATTGCCGGTGCCACCCCCTAGCACTGAAGAAATTGTGGAGATTTACCAGTTCTTGTTGTCGGACCTCACTTGCAACTTGAAGCCTATCATCACGGATCTAACCATTATTGCAGAGCTTCAGGCAGAGCATGCCAGAGGCATCGCCGATGCAATTTGCACTCGGATTCTTGAGGTGCCTGCAGATCAAAAGTTGCCTTCCCTCTATCTTTTGGACAGTATTGTGAAGAATGTTGGTCAGGGATATATTATATACTTCTCTTCCTGTCTGCCTGAAATTTTTTGTGAGGCATACAGGCAGGTTGATCCTAAGCTGTGTAATGCTATGCGCCATCTCTTCGGTACCTGGTCATCAGTCTTTCCACCTTCTGTCCTACGCAAGATTGAAGCTCAACTGCAGTTTTCTCAGCCAATTAATAATCGGTCATCTACCTCTGATCCCCTCAGGGTGTCTGAATCTCGTCAAGCAACTCATGGCATACATATCAATCCGAAGTACCTGCAGCAGTTGGAACACTCTAACATGGATAGTGTTGGAGGTGAAAACTTGGAAGCAACAGTAAATTTGGGTCTCGCAAATTTTGGCCGTGGAGCTAGTAAGATGCATCAATCTTTACCCAGAAGGCATGGGAGATCTTCTGGAATTGGACTTGATAGGCCTCCATTAGCAACTATAGATGAGTGTGCAGTTGACCATTCTTCTAGCAGGATTGTTGAGAGAGATCCTCTTTCTCATCCTGCATTTAATTATGGACTTGGTAAAGCAGGAAGTAGAGGGGAAGAGTCGACTGCGTGGAAACAAAAACATCATTCTGATGATGGTCGGAACCAGTTTCAGGTTTCTATGTCTTGTAGTCTTAGTAATGGGCATCAGCGTCAAAATCTTAAAGCTTTAATAGATGCATATGGGAGCGATAAAAACGACGAAACCTTCAATAATAAGCCTTTGTTGGTTGAACGTCAGGACATAAATGGTTTAAACAAGGTTGTGTCAACATCATGGCAAAACACTGAAGAGGAGGAATTTGATTGGGAAGATATGAGTCCAACATTAGCAGACCATAGTAGGAATAATGATATCTTACCATCAAGTATTGGTTTCTCCAGGGAAACGCCTGTTATTAGTGCAGCTACTTCAGAGCAGGATCCTAGGCATAGTTGGTCTAGTCGGTCGCAGCTACCACCAATGGATGATTCCTCTGTTGTCCCAGGAGATAAATTTATATATTCAAGTTATGGACATGGATCACCAGTTCATGCATCTGGATACCAAAATCAGACAAACCAAAGTTTAAGCTCCCGGCCACCTCTTGAAGCTTGGAATATTAGAGGTCGAGCAAGCAATATTCAGATATCCCCTGTCAGTAACATTCCAAATAACGTTATAAACCAATATGGGACTCGGTCTGCTTTGTCCAGAATGGGTTCCACAATGGAGTCTCATGTGGAGATTCGTCCAACAGTTTTACCAACATCTCTTGGAATGAGGCCCCCAGTTAATTTTCATGCTGTTCGCCCCTCCACCTTAAATTATAGATTGCCCTTGGATCAACATGTCAAGAGTCAGTTTGAGCCAAATAATGGTCAAAATAATTCATCATTTTTGGACAGCGTTGAGAACAAGGTTACAGGCTTATCAAAGCTGCAGCAGCTGCCAACCCAGCTAGCTGGGCAGATTTCATTTAACCAGAAAAACCATGGGCAAGCATCACAACAAGTTTTTCCATCTCCGGATGTGCAAGAGAGGTTGCTTAGATCACAAGCTCCAGCAGCTTTGCAATTTAGTCACGGAAGCTTGTTGCTAGGGCATACTGGTGCAATAAGTAAAGCCATGCCAAATTCGCTTCCTGCTGTACAATTCTCTACAGTCCAAAACATTGCAAATAAATCTTCTCAATTACAAGGGGGAGATTTGATATCTTTACTTCCTTTCTCCCATCCTTCTATGTCACTAACAATACCTCATTCAAATGCTGGTCCTATTGTGTCAACCCAACAACCAGGCGGTGCATTTTCTAGTTTAATTAATTCACTTATGGCCCAAGGTTTGATATCAGTAACTAATCAACCTCCTGAACAGGATTCGGTTGGAACTGAGTTTAATCCAGATGTTCTAAAGATTCGTCATGAGTCTGCAATCAGTGCCTTATATGGCGATCTTCCTAGGCAATGCACTACCTGTGGCCTTCGATTCAAGTGCCAAGAGGAGCACAGTAGTCATATGGATTGGCATGTTACTAAGAACAGGATGTCTAAAATTCATAAGCAGAAGTACTCTCGCAAGTGGTTTGTGAGTGAGAGTATGTGGCTTAGTGGAGCAGAGGCATTGGGAACAGAATCAGTCCCTGTTTTTTTGCCTAGTGAGATTCTAGAGGTGGCAAAAGATGATGAAGAGTTGGCTGTGCCAGCTAACCAGGATCAGAATACATGTGCATTATGTGGCGAGCCTTTCGATGAGTTTTACAGTGATGAAACTGAGGAATGGATGTACAGAGGAGCTGTATATATCAATGCACCCAAGGGAACAATAGCAGGCATGGATAGGTCGCATTTAGGCCCCATTGTTCATGCTAAGTGCAGATCTGAGTCTAATGTTGTCCCATCTAAAGATAATCGACTGGATGAAAGGGGCACCGATGAGGAGGATAGTCAACGAAAACGGAGGCGGAGTTAA	2865	0.4366	MDPQNFLFSRENPRTHSFSTSPIVSSKPNIANEIAQKPSPSILVGRFKALLKEREDEFRASSGDKLPVPPPSTEEIVEIYQFLLSDLTCNLKPIITDLTIIAELQAEHARGIADAICTRILEVPADQKLPSLYLLDSIVKNVGQGYIIYFSSCLPEIFCEAYRQVDPKLCNAMRHLFGTWSSVFPPSVLRKIEAQLQFSQPINNRSSTSDPLRVSESRQATHGIHINPKYLQQLEHSNMDSVGGENLEATVNLGLANFGRGASKMHQSLPRRHGRSSGIGLDRPPLATIDECAVDHSSSRIVERDPLSHPAFNYGLGKAGSRGEESTAWKQKHHSDDGRNQFQVSMSCSLSNGHQRQNLKALIDAYGSDKNDETFNNKPLLVERQDINGLNKVVSTSWQNTEEEEFDWEDMSPTLADHSRNNDILPSSIGFSRETPVISAATSEQDPRHSWSSRSQLPPMDDSSVVPGDKFIYSSYGHGSPVHASGYQNQTNQSLSSRPPLEAWNIRGRASNIQISPVSNIPNNVINQYGTRSALSRMGSTMESHVEIRPTVLPTSLGMRPPVNFHAVRPSTLNYRLPLDQHVKSQFEPNNGQNNSSFLDSVENKVTGLSKLQQLPTQLAGQISFNQKNHGQASQQVFPSPDVQERLLRSQAPAALQFSHGSLLLGHTGAISKAMPNSLPAVQFSTVQNIANKSSQLQGGDLISLLPFSHPSMSLTIPHSNAGPIVSTQQPGGAFSSLINSLMAQGLISVTNQPPEQDSVGTEFNPDVLKIRHESAISALYGDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKIHKQKYSRKWFVSESMWLSGAEALGTESVPVFLPSEILEVAKDDEELAVPANQDQNTCALCGEPFDEFYSDETEEWMYRGAVYINAPKGTIAGMDRSHLGPIVHAKCRSESNVVPSKDNRLDERGTDEEDSQRKRRRS	954

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr11g00534	954	MobiDBLite	consensus disorder prediction	927	954	-	-
	Accr11g00534	954	SUPERFAMILY	ENTH/VHS domain	71	200	IPR008942	-
	Accr11g00534	954	Pfam	CID domain	93	191	IPR006569	-
	Accr11g00534	954	ProSiteProfiles	CID domain profile.	72	200	IPR006569	-
	Accr11g00534	954	Gene3D	-	70	198	IPR008942	-
	Accr11g00534	954	MobiDBLite	consensus disorder prediction	440	462	-	-
	Accr11g00534	954	FunFam	polyadenylation and cleavage factor homolog 4	69	197	-	-
	Accr11g00534	954	MobiDBLite	consensus disorder prediction	1	24	-	-
	Accr11g00534	954	SMART	558neu5	75	197	IPR006569	-
	Accr11g00534	954	ProSitePatterns	Zinc finger C2H2 type domain signature.	788	808	IPR013087	-
	Accr11g00534	954	MobiDBLite	consensus disorder prediction	317	338	-	-
	Accr11g00534	954	MobiDBLite	consensus disorder prediction	926	954	-	-
	Accr11g00534	954	PANTHER	PRE-MRNA CLEAVAGE COMPLEX II	69	940	IPR045154	GO:0000993\|GO:0003729\|GO:0006369\|GO:0006378\|GO:0006379
	Accr11g00534	954	CDD	CID_Pcf11	80	197	IPR047415	-
	Accr11g00534	954	MobiDBLite	consensus disorder prediction	440	460	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr11g00534	Accr-Chr11	8037792	8044689	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr11g00534	697	954	C2H2 Transcription Factor Family	AT4G04885	65.504	4.90e-104	341

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr11g00534	K14400		-	gmx:100794796	1101.66