Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00530 ATGGCTATGGCTTCTCCCAACCAGTCCCTTCTTGACAAACCCAATAAATCAATCTCCAAAACCATCTGGCTTCTTCTCTCTCTATCTGCTCTCTTCAGCTCTGCTCTGTTCGCTTCTTATCTCTTCTCACCCACCTCCTTCATCTTCAACCTCTCTCACCCTCATCACCATCTCTGTGACCATGCCCTTCACAAATCATCATGCCTTGCCCACCTCTCTGAACTAACTCAAGCTTCAACCTTTACTACCTCCAACGACCTAAACTCCAAATTGCTTCACTCTCTCCTCACCAAAACCACCTCACAAATCCAAAAGACTTTGGACTCAACCAAAGCCATCAAATACAGAATCAACGATCCCAAACAGCAGCAAGCTTTGCAAGTCTGTGAGCAACTCCTAGAATTGTCCCTCGATAGAGTTTGGGACTCAATGGTGGCTCTCACAGAAAAGACCACCAAATCCAACCAAGATGCTCACACTTGGCTCAGCACTGTCCTCACTAATCACGTCACTTGCCTTGATGAGGTAGAAGGATCAGCTCGAGCCCTTATTGAATCTGACCTCAATGACTTAGTCTCGAGAGCCAGAACCTCCCTAGCCTTGCTTGTTCACGTTATGCCCTCTAAAATTGATGTCGTTGATGAGCAACTTAATGGTGAGTTTCCCTCATGGATAACGAGTAAGGACAGGAAGCTTCTAGAAGCTCCTTCTAATGATATAAAGGCGAACGTTGTGGTGGCTAAGGATGGAAGTGGGAGGTTTAAGACTGTGGGCGAAGCTGTAGCTTCGGCCCCAGATAACAGTAAGACGAGGTATGTGATATATGTGAAGAAGGGAGTTTACAAAGAGAATGTTGAGATTGGATCCACGAAGAAGAATGTGATGCTGGTGGGTGACGGTATGGATTCGACCATCATCACCGGAAGTTTGAATTTTGTCGATGGAACACCCACCTTTAAAACGGCCACCGTCGGTATGGATCCTAAAACCTCTGTAGTTAGTTTTCATCATCTCCATTGTTTTTATTGA 1029 0.4558 MAMASPNQSLLDKPNKSISKTIWLLLSLSALFSSALFASYLFSPTSFIFNLSHPHHHLCDHALHKSSCLAHLSELTQASTFTTSNDLNSKLLHSLLTKTTSQIQKTLDSTKAIKYRINDPKQQQALQVCEQLLELSLDRVWDSMVALTEKTTKSNQDAHTWLSTVLTNHVTCLDEVEGSARALIESDLNDLVSRARTSLALLVHVMPSKIDVVDEQLNGEFPSWITSKDRKLLEAPSNDIKANVVVAKDGSGRFKTVGEAVASAPDNSKTRYVIYVKKGVYKENVEIGSTKKNVMLVGDGMDSTIITGSLNFVDGTPTFKTATVGMDPKTSVVSFHHLHCFY 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00530 342 Gene3D - 237 335 IPR012334 -
Accr11g00530 342 Pfam Plant invertase/pectin methylesterase inhibitor 57 190 IPR006501 GO:0004857
Accr11g00530 342 Pfam Pectinesterase 243 328 IPR000070 GO:0030599|GO:0042545
Accr11g00530 342 NCBIfam pectinesterase inhibitor domain 56 180 IPR006501 GO:0004857
Accr11g00530 342 ProSitePatterns Pectinesterase signature 1. 268 287 IPR018040 -
Accr11g00530 342 SUPERFAMILY Pectin lyase-like 241 326 IPR011050 -
Accr11g00530 342 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 205 IPR035513 -
Accr11g00530 342 PANTHER PECTINESTERASE 40 327 - -
Accr11g00530 342 CDD PMEI-like_4 66 203 - -
Accr11g00530 342 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 190 IPR035513 -
Accr11g00530 342 SMART PMEI_2 50 201 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00530 Accr-Chr11 7961221 7962249 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00530 3 327 Carbohydrate Esterase AT1G11580 44.311 8.36e-79 249