Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00515 ATGGATTTATATTTTGAACCCCGAGCAGAATCCTTCAAGATTGAAGTAGGGTTCTTCGACACCATCCTTCAGATCAAACAGAGGATTCAAAAACACAAAGGCATTCCCGTCTCAATGCAAACCCTAATCTTCGACGGCGAAACTCTTCCCGACGACGGTTACATCCAGAAACTTGTCCTCCTCCATGAGCCCCACGTTCAGCTCCTCATCGCCGCCGATTTCTTCAAGAACCTTCCCGTCAACACGGAGGAGTTTTCTCCGGCTCCGTCCACCGTGGAATTGCACGTCAACGTGAAAACCCCTTCCTCTAAGATCCGTACCCTACAAATGGACGCCAACGACACCGTTCTGAAGCTGAAAGAAAGAATTCAAGAAATCGAGAGCGTACCAATGAATAACAGTCTAGTGGTCCGTTTATTAGGTAAAGAATTACAAGACAATCAGATGTTACTGGATTGCGAGATTTTTGAGCATTCTGTAATTGACGTCAGTTTGAGACCATTGCCTGTGCCGGTGCCGGTGAAAGGCATCGGGAATAATAATGATGGCGGCGGAGGAGTTTCGAGGAAGTTGAGGGTGATGGTTCAGAGCATGTGTGGGAAAAAGAAGATACCAATGGAAGTGAATCCAAGTGATAAAGTGGGAGAGTTGAGGAAGGAGCTTCAGCAGTTGAACCAGAGGGATCAATTTCCTCTTCCCTCGGAGGGTTATTTCTTCATTTGCAGACAGAATTTGATGCACGACGATAAGTCTTTCCGGTCAAACCAAGTCGCTCAGGGCGACACCATAGAGGTCTTCAGAGGAAGCGTTACTGACGGAGATTCATCATCTTGGTAG 837 0.4695 MDLYFEPRAESFKIEVGFFDTILQIKQRIQKHKGIPVSMQTLIFDGETLPDDGYIQKLVLLHEPHVQLLIAADFFKNLPVNTEEFSPAPSTVELHVNVKTPSSKIRTLQMDANDTVLKLKERIQEIESVPMNNSLVVRLLGKELQDNQMLLDCEIFEHSVIDVSLRPLPVPVPVKGIGNNNDGGGGVSRKLRVMVQSMCGKKKIPMEVNPSDKVGELRKELQQLNQRDQFPLPSEGYFFICRQNLMHDDKSFRSNQVAQGDTIEVFRGSVTDGDSSSW 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00515 278 ProSiteProfiles Ubiquitin domain profile. 94 166 IPR000626 GO:0005515
Accr11g00515 278 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 73 - -
Accr11g00515 278 CDD Ubl_ubiquitin_like 96 163 - -
Accr11g00515 278 SUPERFAMILY Ubiquitin-like 95 178 IPR029071 -
Accr11g00515 278 ProSiteProfiles Ubiquitin domain profile. 191 265 IPR000626 GO:0005515
Accr11g00515 278 SUPERFAMILY Ubiquitin-like 9 70 IPR029071 -
Accr11g00515 278 CDD Ubl_ubiquitin_like 193 266 - -
Accr11g00515 278 Gene3D - 181 271 - -
Accr11g00515 278 Pfam Ubiquitin family 10 56 IPR000626 GO:0005515
Accr11g00515 278 Pfam Ubiquitin family 96 167 IPR000626 GO:0005515
Accr11g00515 278 ProSitePatterns Ubiquitin domain signature. 26 51 IPR019954 -
Accr11g00515 278 SUPERFAMILY Ubiquitin-like 192 267 IPR029071 -
Accr11g00515 278 Gene3D - 90 171 - -
Accr11g00515 278 Gene3D - 3 70 - -
Accr11g00515 278 ProSiteProfiles Ubiquitin domain profile. 1 70 IPR000626 GO:0005515
Accr11g00515 278 SMART ubq_7 191 268 IPR000626 GO:0005515
Accr11g00515 278 SMART ubq_7 94 166 IPR000626 GO:0005515
Accr11g00515 278 SMART ubq_7 1 71 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00515 Accr-Chr11 7789992 7790828 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00515 94 166 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 31.507 7.61e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00515 - - jcu:119369119 256.144