Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00513 ATGGAGTTAATTTTTGAACCCCAAGCAGAACCCTTCAAGATTGAAGATGTATGGTGGTTCCACACCATCCTTGAGATCAAACATAGGATTGAAAAAGACAAAGGCATTCCCGTCTCAATGCAAACCCTAATCTTCAACGGCAAAACTCTTCCCGACAAAGCCAACGTCGGGAAATCTGTCCTCCTCCCTGATTCCAACGTTCGGCTCCTCATCGCCGCCGATTTCTTCAAGAACCTGCCCGTCAACACGGAGGAGTTTTCTCCGGCTCCGTCCACCGTGAAATTGCACGTCAACGTGAAAACCCCTTCCTCTAAGATCCGTACCCTACAAATGGACGCCAACGACACCGTTCTGAAGCTGAAAGAAAGAATTCAAGAATTCCAGAGCGTACCAATGAATAACAGTCTAGTGGTCAGTTTATTAGGTAAAGAATTACAAGACAGTCAGATGTTACTGGATTGCGAGATTTCTGAGGATTCTGTAATTGACGTCAGTTTGAGACCATTGCCTGTGCCGGTGCCGGTGAAAGGCATCGGGAATAATAATGATGGCGGCGGAGGAGTTTCGAGGAAGTTGAGGGTGATGGTTCAGAGCATGTGTGGGAAAAGAAAGATACCAATGGAAGTGAATCCAAGTGATAAAGTGGGAGAGTTGAGGAAGGAGCTTCAGAGGTTGAACCAGCAGGGGGGTCAACTTCCTTTTCGTCTTCCTTCGGAGGATTATCTCTTCATTTGCGGACAGAATGTGCTGGACGAGGATAAGTCTTTCCTGTGGTACCAAGTTGCTCGGGGCGACACCATTAGGATGATCAAAGGAAGAGTTGCTGCTGGTAGATCTCGGTAG 843 0.4733 MELIFEPQAEPFKIEDVWWFHTILEIKHRIEKDKGIPVSMQTLIFNGKTLPDKANVGKSVLLPDSNVRLLIAADFFKNLPVNTEEFSPAPSTVKLHVNVKTPSSKIRTLQMDANDTVLKLKERIQEFQSVPMNNSLVVSLLGKELQDSQMLLDCEISEDSVIDVSLRPLPVPVPVKGIGNNNDGGGGVSRKLRVMVQSMCGKRKIPMEVNPSDKVGELRKELQRLNQQGGQLPFRLPSEDYLFICGQNVLDEDKSFLWYQVARGDTIRMIKGRVAAGRSR 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00513 280 ProSiteProfiles Ubiquitin domain profile. 22 71 IPR000626 GO:0005515
Accr11g00513 280 Gene3D - 91 169 - -
Accr11g00513 280 CDD Ubl_ubiquitin_like 194 270 - -
Accr11g00513 280 Gene3D - 4 74 - -
Accr11g00513 280 CDD Ubl_ubiquitin_like 97 164 - -
Accr11g00513 280 ProSiteProfiles Ubiquitin domain profile. 95 167 IPR000626 GO:0005515
Accr11g00513 280 SUPERFAMILY Ubiquitin-like 12 72 IPR029071 -
Accr11g00513 280 Gene3D - 192 270 - -
Accr11g00513 280 SUPERFAMILY Ubiquitin-like 96 179 IPR029071 -
Accr11g00513 280 SMART ubq_7 1 72 IPR000626 GO:0005515
Accr11g00513 280 SMART ubq_7 95 167 IPR000626 GO:0005515
Accr11g00513 280 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 73 - -
Accr11g00513 280 Pfam Ubiquitin family 22 71 IPR000626 GO:0005515
Accr11g00513 280 Pfam Ubiquitin family 97 168 IPR000626 GO:0005515
Accr11g00513 280 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Accr11g00513 280 SUPERFAMILY Ubiquitin-like 193 271 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00513 Accr-Chr11 7781826 7782668 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00513 95 167 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 30.137 5.37e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00513 - - mdm:103422458 231.876