Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00512 ATGGATTTAATTTTTGAACCGGAAGTAGGAAAACCCTTCATGATTGAAGTATGGTACTTCGACACCATCCTTGAGATCAAAGAGAAGATTAAAAAATACCAAGACATTCCCGTCTCAAAGCAAACCCTAATCTTCAACGGCCAAACTCTTTCCGACGATGCTGACATCGAGAAATGTTTGCTCCTTGATAGGTCCCACGTTCAGCTCCGTATCGCCGACGATTCCTCCAAGAACCGGCCCGTCAAAACGGAGGAGTTTTCTCCGAAGCCGTCCGGAGTGAAATTCCACGTCAACGTGAAAACCCCTTCCGCTAAGATCCGTACCTTAGAAATGGACGCAAACGACACCGTCTCGAAGCTGAAAGAAAGAATTCAAGAAATCGAGAGCGTACCAATGAATAACAGGCTAGTGGTCCGTTTATTAGGTAAAGAATTACAAGACAATCAGATGTTAGTGGATTGTGGGATTTCTGAGATTTCTGAGATTGACATCAGTTTGAGACCATTGCCTGTGCCGGTGCCGGTGAAAGGCATCGGCAATAATAATAATGGCGGCAGAGGAGTTTCGAGGAAGTTGAGGGTGATGGTTCAGTCCATGTGTGGGAAAAAGAAGATACCAATGGAAGTGAATCCAAGTGATAAAGTGGGAGAGTTGAGGAAGGAGCTTCAGAAGTTGAACCAGAGGGAACAACTTCTTCCTCTTCCTTCGGAGGGCTATTTCTTCATTTGTGGACAGAATGTGATGGACGACGATAAGTCTTTCCGGTGGCACCAAGTTGCTCAGGGCGACACCATTGAGATCTTCCGCGGATTCGTTACTGCTGGTGCATCTTGA 834 0.4592 MDLIFEPEVGKPFMIEVWYFDTILEIKEKIKKYQDIPVSKQTLIFNGQTLSDDADIEKCLLLDRSHVQLRIADDSSKNRPVKTEEFSPKPSGVKFHVNVKTPSAKIRTLEMDANDTVSKLKERIQEIESVPMNNRLVVRLLGKELQDNQMLVDCGISEISEIDISLRPLPVPVPVKGIGNNNNGGRGVSRKLRVMVQSMCGKKKIPMEVNPSDKVGELRKELQKLNQREQLLPLPSEGYFFICGQNVMDDDKSFRWHQVAQGDTIEIFRGFVTAGAS 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00512 277 ProSiteProfiles Ubiquitin domain profile. 95 167 IPR000626 GO:0005515
Accr11g00512 277 CDD Ubl_ubiquitin_like 97 162 - -
Accr11g00512 277 SUPERFAMILY Ubiquitin-like 193 269 IPR029071 -
Accr11g00512 277 CDD Ubl_ubiquitin_like 194 268 - -
Accr11g00512 277 Pfam Ubiquitin family 13 71 IPR000626 GO:0005515
Accr11g00512 277 Pfam Ubiquitin family 97 167 IPR000626 GO:0005515
Accr11g00512 277 FunFam Ubiquitin-like superfamily protein 1 72 - -
Accr11g00512 277 SUPERFAMILY Ubiquitin-like 1 72 IPR029071 -
Accr11g00512 277 Gene3D - 1 70 - -
Accr11g00512 277 ProSiteProfiles Ubiquitin domain profile. 192 267 IPR000626 GO:0005515
Accr11g00512 277 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 80 - -
Accr11g00512 277 SMART ubq_7 95 167 IPR000626 GO:0005515
Accr11g00512 277 SMART ubq_7 1 72 IPR000626 GO:0005515
Accr11g00512 277 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Accr11g00512 277 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Accr11g00512 277 SUPERFAMILY Ubiquitin-like 96 179 IPR029071 -
Accr11g00512 277 Gene3D - 71 167 - -
Accr11g00512 277 Gene3D - 192 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00512 Accr-Chr11 7776799 7777632 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00512 97 167 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 33.803 6.71e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00512 - - jcu:119369119 284.648