Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00493 ATGTTGGTCATTAACATGCCTTCCCACAAGATTATCTTACTCTTTTTCTTTATTAACTTTCTCTATTCTGCTACTACTACTCAAGCGCAGCCCACTTATACTAATAGCAGCTGCTCTGCCGCCACCTTCACCGCCAATAGTTCCTTCCAATCCAACCTCACCAGCCTCCTCTCTACCTTAGCTTCCAACAACACCGCCAAAATCGACTTCTTCAACACCACCATCCGCGGCGGTAACAACACCCTATACGGCCTCTTCATGTGCCGGGGTGACGTCACCCTCCAGTTGTGCCACCAGTGCGTCGTTGACGCAACCACCAATATACGTTCCCTGTGCAACGTCTCGAAGGAGGCCGTGATCTGGTATGAGGAGTGCATGGTTCGCTATTCCGACCGCTACATCTTTTCCACCGTCAACACGAAGCCTAATAGATGTGGGGCCAACTCCAACAACGTCGCCAACAACCAGACAGGATTCATAAATGTATTGTCGACAACTATGAACAAGGCGGCAGATGAGGCGGCGAAACCTGATTTGGGGCGAAAAAAGTTTGCAACAGAAGAAGCGAGCTTACAGTTTCAAACTATGTATTGTCTGGTTCAGTGCACGCCGGACCTTTCCCCCCAAGGTTGTAGAACATGTCTGAGAGATGCGATTCGGGATCTTTTCATCTGTACTAATAACAGGAGTATAGGAGGAAGAGTTCTATATCCTAGTTGTAACCTTCGTTATGAATTGTTCACCTTCTATAATTCTAGTGGTAGGCCAGCATCGCCGCCTCCTCCGTCACTTTTTCCAGCAACAAATTCTTCACAAGGAAAAGCAAGGACCATTATGATAGTTGTTGTTTCTGTCGGTGGTGCGGTGATACTTTTTAGTTTGGTGTTCTTTCTCTTCAGGAGTTTAATAAGGAAGAGACTCAGGACTGAACTCAGACAAAAATACTTTGGAGATGAAAGCAACACTTTAGAGCCTCTGCAATTCAATTTGGCTACTATTGAGGCTGCAACAAATAAGTTTTCACAGGAAAATTGTTTAGGCCAAGGTGGATTTGGTCAGGTTCACAAGGGTATTCTTTCAAATGGTCAAGAAATAGCGGTGAAGAGACTTTCTAAAGGTTCCGGCCAAGGAGCAGAAGAATTTAAAAACGAAGTTTTACTAATAGCCAGACTCCAACACAGAAATTTGGTGACCTTAATAGGATTTTGCATAGAAGAGCAAGAGAAAATTCTCATTTATGAATATGTTCCCAATGAAAGCCTTGATTACTTTCTATTTGGTACCCAGAAAAATAGGAGATTAACTTGGGAGGAGCGTTATGAAATCATAAGAGGAGTTGCTGGAGGGATTCTATATCTTCATGAATATTCTCGTCTTAAAATTATACATCGTGATCTCAAACCTAGCAATATTTTGTTAGACAATGAAATGAATGCAAAAATTTCAGATTTTGGCCTAGCTAGAATGGTTGCTATCAATGAAAATGAGGGAAATACAAGGAGAATTGTTGGAACATATGGTTATATGCCTCCAGAATACGCAATGTTCGGGTTATATTCTGAAAAAACAGATGTCTTTAGTTTCGGAGTTATCATTTTAGAAATTATCAGTGGAAAGAAGAATGTAAGTTGTCATGATGACTCACAGTATGCAGATAGCCTCTTGAGCTATACATGGAATCAATGGAGTAATGAAGAGTTGTTAGAGATGTTGGATTCCAATCTGAAAGAGATGGAGTCGTATGATGAAGTAAGCAGGTGCATCCAAATTGGGCTGTTATGTGTTCAAAAGCATCCAGATGCAAGACCTTCCATGGCCACAATTGTTTCATATCTGAGCAATGAATCAATTGAATTGCCACATCCACAGCAACCTGCTATGTTTTTGCGTCCTCGAAGGGGACTTACTTCTGCAAGTAAAGAATATAGCTCCATTAATGACATGTCTATTAGTGATTTCTTTCCTCGCTAG 1971 0.4176 MLVINMPSHKIILLFFFINFLYSATTTQAQPTYTNSSCSAATFTANSSFQSNLTSLLSTLASNNTAKIDFFNTTIRGGNNTLYGLFMCRGDVTLQLCHQCVVDATTNIRSLCNVSKEAVIWYEECMVRYSDRYIFSTVNTKPNRCGANSNNVANNQTGFINVLSTTMNKAADEAAKPDLGRKKFATEEASLQFQTMYCLVQCTPDLSPQGCRTCLRDAIRDLFICTNNRSIGGRVLYPSCNLRYELFTFYNSSGRPASPPPPSLFPATNSSQGKARTIMIVVVSVGGAVILFSLVFFLFRSLIRKRLRTELRQKYFGDESNTLEPLQFNLATIEAATNKFSQENCLGQGGFGQVHKGILSNGQEIAVKRLSKGSGQGAEEFKNEVLLIARLQHRNLVTLIGFCIEEQEKILIYEYVPNESLDYFLFGTQKNRRLTWEERYEIIRGVAGGILYLHEYSRLKIIHRDLKPSNILLDNEMNAKISDFGLARMVAINENEGNTRRIVGTYGYMPPEYAMFGLYSEKTDVFSFGVIILEIISGKKNVSCHDDSQYADSLLSYTWNQWSNEELLEMLDSNLKEMESYDEVSRCIQIGLLCVQKHPDARPSMATIVSYLSNESIELPHPQQPAMFLRPRRGLTSASKEYSSINDMSISDFFPR 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00493 656 ProSiteProfiles Protein kinase domain profile. 340 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr11g00493 656 SMART serkin_6 340 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr11g00493 656 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 22 651 - -
Accr11g00493 656 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 31 133 - -
Accr11g00493 656 FunFam Cysteine-rich receptor-like protein kinase 25 142 249 - -
Accr11g00493 656 Pfam Salt stress response/antifungal 38 131 IPR002902 -
Accr11g00493 656 Pfam Salt stress response/antifungal 145 245 IPR002902 -
Accr11g00493 656 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Accr11g00493 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Accr11g00493 656 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 304 415 - -
Accr11g00493 656 CDD STKc_IRAK 346 612 - -
Accr11g00493 656 Pfam Protein tyrosine and serine/threonine kinase 343 612 IPR001245 GO:0004672|GO:0006468
Accr11g00493 656 ProSiteProfiles Gnk2-homologous domain profile. 31 134 IPR002902 -
Accr11g00493 656 FunFam cysteine-rich receptor-like protein kinase 10 416 619 - -
Accr11g00493 656 SUPERFAMILY Protein kinase-like (PK-like) 323 639 IPR011009 -
Accr11g00493 656 Gene3D - 141 249 IPR038408 -
Accr11g00493 656 Gene3D - 30 133 IPR038408 -
Accr11g00493 656 ProSiteProfiles Gnk2-homologous domain profile. 140 249 IPR002902 -
Accr11g00493 656 Gene3D Phosphorylase Kinase; domain 1 303 415 - -
Accr11g00493 656 Gene3D Transferase(Phosphotransferase) domain 1 416 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00493 Accr-Chr11 7427364 7430149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00493 12 656 Receptor kinase-like Gene Family AT4G05200 43.852 0.0 552
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Accr11g00493 PK_Tyr_Ser-Thr 1.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00493 - - pcin:129286093 991.104