Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00454 ATGTCCATCTTCTTCATCCTCCTCCTCTCGATATTTCTGAGCTTCACAAGCGAAGCTGCTCCGATTTACATGTCTCATGCCTGTACTAATGGAAGCTTTCTCGAACTCAACATTACGTTCCAAGCCAATTTGAATGTCCTTCTCTCTTCGCTCACCTCCAACGCCTCTCTCCCCGACGGTTACTACCGTACCACCGTGTCCCCATCAACCCCTCCCACCATCACCGGACTTTTCCTCTGTCGCGGCGACGTCACCCCCGCCGTGTGCCAATCCTGCGTCGCCGCCGCATCCACCGAGATAACGCGCCGCTGCCCAAACCAAACAGAGTCCATAATCTGGTACGACGAGTGTATGCTTCGTTACTCGAACGAGAGCTTGAACCCCTTGGTTCCTGCCGTGCCTATGCGAAACACCAACACCATTCCTAGCTCCGAACGGGGTCGATTCGAAGACTTGCTCGCGAACATGTTGAGTGATGTGACTCAGAGGGCTAATACCCAGACAGGGAAAAAGTTTGCTACGGCGGAAGTGAACTTCACGTCGTCGGAAACCTTGTACGGCCTCGCACAGTGCGTTCCTGATTCTATGCATTGTGATGCTTGTTTCAGTAGTGCCATTTCTTCTCTTCCAAATTGCTGTAGTGGAAGCAAAGGAGCAACAATTTTGGTTCCATCATGTAATCTAAGATACGAATTTTATCCCTTTTACAATATAACCCATGTATCCTCTGAATCACTAGTTCCTCCTACTTCAGGAAGTAGAAATATCTTAATGATTGCTGCGATTGTTGTCCCGGTTTTTGTTGTTTTGGCACTTTTCGTTGTGGGTTGTTGTTTCCTCCGTCGGACAGCAAGCAAGAAGTACAACACATCCACACAGGATTCAACTGGGATTGGCATCTCAGAGATAGAGTCCTTGCAATTTGAATTGGCTACAATAGAAGCTGCCACGAAAAAGTTCTCAGATGAGAACAAGATTGGCCAAGGTGGATTTGGGGCAGTATATAGGGGTATCCTTCCAAACGGACAAGAGATTGCTGTGAAGAGGTTGTTGGTAACATCCTTGCAGGGTGCTTTGGGGTTTACAAATGAAGCTGCTCTTGTGGCCAAGCTTCAACATAGGAATTTAGTGAGGCTGTTGGGATTTTGCTTAGAGGGGCAAGAGAAGATACTTATCTATGAATATATCCCAAACAAAAGCCTTGACAAGTTTCTATTTGATCCAGAAAGGAAGAGAATACTAGATTGGTCGAAACGCTACAAGATTATTGCAGGCGTTGCTCGAGGAATTTTATATCTCCATCAGGATTCTCAACCTGGAATAATTCATCGTGACCTCAAAGCTAGTAATATTTTACTAGATGCTAATATGAATCCAAAAATTTCAGATTTTGGCATTGCAAAAATCTTTCAAGGTGATCAGACTCAAGTAAATACAGGAAGAATAGTTGGGACCTATGGTTATATGTCTCCAGAATATGCAATGCATGGACAATTTTCTATAAAGTCCGATGTGTTTAGCTTTGGTGTCTTGCTTTTAGAGATTATTACCGGCAAGAAGAACACTGATTTGTACCAGTCACCTCAAGCCAATGACCTCTTAAGTTACGCCTGGAATAATTGGACACAAAAAACACCTTTGGAGTTGTTGGATCCAACACTGAGAGGTTCTTATTCGAGAAACGAAGTCATAAGATGCATTCATATTGCTTTATTGTGTGTTCAGGAGAATCCATCTGATAGACCTTCGATGGCAAATATAGTACTTATGCTCAACAGTTATTCTGTTACTTTGTCATTACCTCGAAAACCTGCATCCTTTATGCGTAGAAGAACACCACCAAACAAGCAAAACAACAAGGGTGTTGATTCAGACAAGTCTTCCAGTTCGATTCTATGGTCTACAAATGAAGAACCCATTACTGAAGTTTACCCTCGATAA 1941 0.4374 MSIFFILLLSIFLSFTSEAAPIYMSHACTNGSFLELNITFQANLNVLLSSLTSNASLPDGYYRTTVSPSTPPTITGLFLCRGDVTPAVCQSCVAAASTEITRRCPNQTESIIWYDECMLRYSNESLNPLVPAVPMRNTNTIPSSERGRFEDLLANMLSDVTQRANTQTGKKFATAEVNFTSSETLYGLAQCVPDSMHCDACFSSAISSLPNCCSGSKGATILVPSCNLRYEFYPFYNITHVSSESLVPPTSGSRNILMIAAIVVPVFVVLALFVVGCCFLRRTASKKYNTSTQDSTGIGISEIESLQFELATIEAATKKFSDENKIGQGGFGAVYRGILPNGQEIAVKRLLVTSLQGALGFTNEAALVAKLQHRNLVRLLGFCLEGQEKILIYEYIPNKSLDKFLFDPERKRILDWSKRYKIIAGVARGILYLHQDSQPGIIHRDLKASNILLDANMNPKISDFGIAKIFQGDQTQVNTGRIVGTYGYMSPEYAMHGQFSIKSDVFSFGVLLLEIITGKKNTDLYQSPQANDLLSYAWNNWTQKTPLELLDPTLRGSYSRNEVIRCIHIALLCVQENPSDRPSMANIVLMLNSYSVTLSLPRKPASFMRRRTPPNKQNNKGVDSDKSSSSILWSTNEEPITEVYPR 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00454 646 ProSiteProfiles Gnk2-homologous domain profile. 22 126 IPR002902 -
Accr11g00454 646 Gene3D - 21 125 IPR038408 -
Accr11g00454 646 Gene3D - 132 235 IPR038408 -
Accr11g00454 646 FunFam cysteine-rich receptor-like protein kinase 10 396 598 - -
Accr11g00454 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Accr11g00454 646 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 36 638 - -
Accr11g00454 646 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 21 125 - -
Accr11g00454 646 SMART serkin_6 320 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr11g00454 646 ProSiteProfiles Protein kinase domain profile. 320 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr11g00454 646 MobiDBLite consensus disorder prediction 611 637 - -
Accr11g00454 646 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 281 395 - -
Accr11g00454 646 ProSiteProfiles Gnk2-homologous domain profile. 129 235 IPR002902 -
Accr11g00454 646 FunFam Cysteine-rich receptor-like protein kinase 10 131 235 - -
Accr11g00454 646 Gene3D Phosphorylase Kinase; domain 1 281 395 - -
Accr11g00454 646 SUPERFAMILY Protein kinase-like (PK-like) 306 616 IPR011009 -
Accr11g00454 646 Pfam Salt stress response/antifungal 144 232 IPR002902 -
Accr11g00454 646 Pfam Salt stress response/antifungal 32 123 IPR002902 -
Accr11g00454 646 Pfam Protein tyrosine and serine/threonine kinase 323 590 IPR001245 GO:0004672|GO:0006468
Accr11g00454 646 Gene3D Transferase(Phosphotransferase) domain 1 396 600 - -
Accr11g00454 646 MobiDBLite consensus disorder prediction 605 646 - -
Accr11g00454 646 CDD STKc_IRAK 326 592 - -
Accr11g00454 646 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00454 Accr-Chr11 5805174 5807970 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00454 1 646 Receptor kinase-like Gene Family AT4G05200 48.507 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Accr11g00454 PK_Tyr_Ser-Thr 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00454 - - gmx:547727 823.542