LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr11g00451	ATGTCCATCTTCATCATCCTCACTCTCTTAGGATTTCTACGCTTCACAAGTGAAGCTGCTTCAGTTTTCAGTTTCACAATTCATTCCTGTAGTACTAGCAATAGAACCTATTTTGAACCCAACAGTACATTTCAAGCCAATTTGAATGTCCTTCTCTCTTCCCTCACCTCCAACGCCTCTCTTCCTGACGGTTACTACCGCACCACCGTGTCCCCCTCGTCCCCTTCCAACGTCACCGGACTTTTCCTCTGTCGAGGTGACACCACTCCCGCTGTGTGCCAATCTTGCGTCGCCGCCGCATCCATGGAGATAACACGCCGATGCCCAAACCAAACAGAGTCCATAATCTGGTACAATGTGTGTATGCTTCGTTACTCGAACAGGGACTTGAACCCCTTGGTTCCTTATGTGCCTTTGGGAAATATCAGCACCATAGCTATCTCGGAACGGGACCGGTTCGACGCCGTGCTGGTGAACATGTTGAATGATGTGACAGGAAAAGCTAATACCCAGACAGGGAAGAAGTTTGCAACGGCGGAAGTGGACTTCACGTCGTCGGAAACCTTGTATTTCCTCGCACAGTGCATTCCTGACTCGTCCAATTCTATTTGTTATTCTTGTTTCAGAAGTGCCATCGGATTTCTTCCAGATTGCTGTAGTGGGAGCAAGGGGGCAACGATTCTGGTTCCATTATGTAATATAAGATATGAATTTTATCCGTTTTACAATAGAGCCGTCGTATCCTCTGAACCACTAGTTCCTCCTACTTCAGGAAGTAGAAATATCTTATTGCTTGTTGCGACTCTTGTCCCGGTTCTTGTTGCTTTGGCACTTCTCGTTTTGGGTTGTTGTTTCCTTCGTAAGAGAGCAAGCAAGAAGTACAACACATACACATTCACAGAGGATTCAACCGGGATTGATCTTTCAGGGATAGAGTCTTTGAAATTTGAATTGGCTGCAATAGAAGCTGCCACGAAAAAGTTCTCAGATGAGAACAAGATTGGCCAAGGTGGATATGGGGCAGTTTACAAGGGCATCCTTGCAAACGGACAGGAGATAGCTGTGAAGAGGTTGTTGGCAACCTCCTTGCAGGGTGCTTTGGAGTTTACAAATGAAGCTGCTCTTATGGTTAAGCTTCAACACAGGAATTTAGTGAGGCTCTTGGGATTTTGCTTAGAGGGGCAAGAGAAGATACTTGTCTATGAATATATCCCAAACAAAAGCCTTGACAAGTTTCTTTTTGATCTACAAAGGAAAAGAATACTAGATTGGCCAAAACGCTACAAGATTATAGTCGGTGTTGCTCGAGGAATGTTGTATCTTCATGAAGATTCTCAACTTAGAATAATTCATCGAGACCTCAAGGCTAGTAATGTTTTACTAGATGCTAATATGAATCCAAAAATTTCAGACTTTGGTGTGGCAAAGATTTTTCATGGTGATCAAACTCAATTAAATACAAGAAGAATTGTTGGGACTCGTGGTTACATGTCTCCAGAATATGCAATGCGTGGACAAATTTCTGTAAAGTCAGATGTGTTTAGCTTTGGTGTCTTAGTTTTAGAGATTATAACTGGCCAGAAGAACACTGATTTGTACCAATCACATCAAGCAAATGACCTCTTAAGCTATGCCTGGAATAACTGGACACAAAAAACACCTCTGGAGTTGTTGGATCCTACACTGAGAGGTTCTTATTCAAGAAACGAAGCCATAAGATGCATCCACATTGCTTTATTATGCGTTCAGGAGAATCCATCCTATAGACCCACTATGGCAACTATAGTACTTATGCTTAACAGTTACTCTGTTACTTTGCCATTACCTCAAAAGCCTGCATCCTTGATGCACAGAAGAACACCAGACAGGTAA	1872	0.4306	MSIFIILTLLGFLRFTSEAASVFSFTIHSCSTSNRTYFEPNSTFQANLNVLLSSLTSNASLPDGYYRTTVSPSSPSNVTGLFLCRGDTTPAVCQSCVAAASMEITRRCPNQTESIIWYNVCMLRYSNRDLNPLVPYVPLGNISTIAISERDRFDAVLVNMLNDVTGKANTQTGKKFATAEVDFTSSETLYFLAQCIPDSSNSICYSCFRSAIGFLPDCCSGSKGATILVPLCNIRYEFYPFYNRAVVSSEPLVPPTSGSRNILLLVATLVPVLVALALLVLGCCFLRKRASKKYNTYTFTEDSTGIDLSGIESLKFELAAIEAATKKFSDENKIGQGGYGAVYKGILANGQEIAVKRLLATSLQGALEFTNEAALMVKLQHRNLVRLLGFCLEGQEKILVYEYIPNKSLDKFLFDLQRKRILDWPKRYKIIVGVARGMLYLHEDSQLRIIHRDLKASNVLLDANMNPKISDFGVAKIFHGDQTQLNTRRIVGTRGYMSPEYAMRGQISVKSDVFSFGVLVLEIITGQKNTDLYQSHQANDLLSYAWNNWTQKTPLELLDPTLRGSYSRNEAIRCIHIALLCVQENPSYRPTMATIVLMLNSYSVTLPLPQKPASLMHRRTPDR	623

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr11g00451	623	Pfam	Salt stress response/antifungal	148	238	IPR002902	-
	Accr11g00451	623	Pfam	Salt stress response/antifungal	30	127	IPR002902	-
	Accr11g00451	623	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 10	23	130	-	-
	Accr11g00451	623	SUPERFAMILY	Protein kinase-like (PK-like)	315	617	IPR011009	-
	Accr11g00451	623	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	449	461	IPR008271	GO:0004672\|GO:0006468
	Accr11g00451	623	ProSiteProfiles	Gnk2-homologous domain profile.	135	241	IPR002902	-
	Accr11g00451	623	ProSiteProfiles	Gnk2-homologous domain profile.	25	130	IPR002902	-
	Accr11g00451	623	FunFam	Cysteine-rich receptor-like protein kinase 10	288	403	-	-
	Accr11g00451	623	Gene3D	Transferase(Phosphotransferase) domain 1	404	606	-	-
	Accr11g00451	623	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	13	615	-	-
	Accr11g00451	623	CDD	STKc_IRAK	334	600	-	-
	Accr11g00451	623	SMART	serkin_6	328	603	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr11g00451	623	Pfam	Protein tyrosine and serine/threonine kinase	331	597	IPR001245	GO:0004672\|GO:0006468
	Accr11g00451	623	FunFam	cysteine-rich receptor-like protein kinase 10	404	606	-	-
	Accr11g00451	623	Gene3D	Phosphorylase Kinase; domain 1	288	403	-	-
	Accr11g00451	623	ProSitePatterns	Protein kinases ATP-binding region signature.	334	356	IPR017441	GO:0005524
	Accr11g00451	623	Gene3D	-	139	241	IPR038408	-
	Accr11g00451	623	Gene3D	-	23	129	IPR038408	-
	Accr11g00451	623	ProSiteProfiles	Protein kinase domain profile.	328	603	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr11g00451	Accr-Chr11	5782137	5784791	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr11g00451	21	623	Receptor kinase-like Gene Family	AT4G05200	48.815	0.0	610

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Accr11g00451		PK_Tyr_Ser-Thr	7.4e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr11g00451	-		-	gmx:547727	757.288