LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr11g00449	ATGGCTGAGGTTTCTCTTAGAATGCTTTCCTTTCTCTGTCTCCTTCCCATTTTCATATCTCAAATCACTGCACAGCCTCAGTTCCTGTATCATAACTGTGACAATGCTAATGGCAACTACACTGCTAATAGTGCTTACCAGACCAACCTCAATAACCTCTTGTCCAATATTGCTTCCAACACAGAAATTGACTATGGCTTCTACAACTTCTCTTTTGGCCAAAACTCTGACAAGGTTAATGCTATAGGATTGTGCAGAGGAGATGTTGCCCCAGATTTATGCCGCAGTTGCCTCAATGATTCTAGAACCCAACTCACCCAGCTCTGTCCAAATCAGATGGAGGCAATTGGATTCTATGACAATTGCATGTTACGCTATTCAAACCGTTCAATATTTAACACCGTCGAAAATTCGCCTGATTTTTGCTTGTTGAACGTTAATAATGCAACAGATGTGGATCAGTTCAATGGAGCGCTGAGGAATTTGCTGGATGGTTTAAGTAGCAGGGCTTCATCAGGGAACTCTCTTCGCAAGTTTGCGACAGGAAGTGCTGAAGGTCCAAACTTTCAGACTCTATTTGGTCTCGTGCAGTGTACACCTGATTTATCTTTAGTTCAGTGTAGTGATTGCTTGGTTAAGGTAATCTCAGATCTCCCAGGATGTTCTGGTGGCAAGATTGGTGGTAGAATTTTAAGACCAAGCTGTAATTTTAGATATGAAAACTATCGCTTCTACAACGCTACTGATGACTCAACGCCACCATCAGAAGGAAAGAGCAACACATCACGAACTATAATTGCCATAGTTGTGCCAATTGCTTCCGTTCTTGTCTTGCTCATCCTTGTCTGCATCTGTTTAAGAATGAGAAAATCGTGGAAATATATTGAAAATGATGACTATGAGGCTGACAATGAAATTAAGTCATCTGAGACATTGCAATTGAAGTATGACACCATCATAGCTGCCACAAATAACTTTTCTGAAGAAAATAAGCTTGGACAAGGCGGATTTGGACCTGTTTATAAGGGTAAGCTTACTGATGGACAAGAAATTGCCGTAAAAAGGTTATCTGGAAATTCGTCCCAAGGGGATACAGAATTTAAGAATGAAGTGCTATTAGTAGCAAAACTTCAGCATCGAAATCTAGTTAGGCTACTTGGTTTTTGTTTGGAAAGGCAAGAAAGACTACTAGTCTATGAGTTTATTCCCCACAAAAGTCTTGATTACTTCATATTTGATCCAATCAAGCGTGCACAGTTATCTTGGGAAGAGCGATACAAAATCATAGGAGGCATTGCTAGAGGACTTCTTTACCTTCATGAAGATTCTCGCTTGCGAATTATTCATCGTGATCTTAAAGCAAGTAACATTCTTTTAGATGCAGAGATGAGTGCAAAAATATCAGATTTTGGTATGGCAAGATTAGTTGGAAGGGACCAAACTCAAGACAATACGAGCAAAGTCGTAGGGACATTTGGATATATGGCACCTGAATATGTATTGCACGGACAATTCTCCGTGAAGACAGATGTTTTTAGTTTTGGTGTATTAGTTCTGGAGATTGTAACTGGTCGTAAAAATAGCGAGGTTGTCCATGGAGAAAATGCAGAGAATCTAGTCAGCTTTGCATGGAGAAATTGGAGGGAAGGAACAGCTACAAAAATTGTGGACCCCGCGATTACAGGAGGTTCAAGAGATGAAATAATGAGATGCATCCATATAGGATTGCTGTGTGTTCAAGATGATGTAGCTGACAGACCAACCATGGCTTCAGTTGAAGTCATGCTTAACAGCTACTCTGCCACCTTTCCCTTGCCTTCCCAACCTTCCTACATGAATAGTAGAAGCTGGTCAGGAGAGTATACTTCAGGGGCAACAAGATCAAATGAACTTAAAAATCAATCTGTTAAAGCATTGTCGAATGATGCATCGATGTTTCAGTCATTTCCTCGGTAG	1956	0.4049	MAEVSLRMLSFLCLLPIFISQITAQPQFLYHNCDNANGNYTANSAYQTNLNNLLSNIASNTEIDYGFYNFSFGQNSDKVNAIGLCRGDVAPDLCRSCLNDSRTQLTQLCPNQMEAIGFYDNCMLRYSNRSIFNTVENSPDFCLLNVNNATDVDQFNGALRNLLDGLSSRASSGNSLRKFATGSAEGPNFQTLFGLVQCTPDLSLVQCSDCLVKVISDLPGCSGGKIGGRILRPSCNFRYENYRFYNATDDSTPPSEGKSNTSRTIIAIVVPIASVLVLLILVCICLRMRKSWKYIENDDYEADNEIKSSETLQLKYDTIIAATNNFSEENKLGQGGFGPVYKGKLTDGQEIAVKRLSGNSSQGDTEFKNEVLLVAKLQHRNLVRLLGFCLERQERLLVYEFIPHKSLDYFIFDPIKRAQLSWEERYKIIGGIARGLLYLHEDSRLRIIHRDLKASNILLDAEMSAKISDFGMARLVGRDQTQDNTSKVVGTFGYMAPEYVLHGQFSVKTDVFSFGVLVLEIVTGRKNSEVVHGENAENLVSFAWRNWREGTATKIVDPAITGGSRDEIMRCIHIGLLCVQDDVADRPTMASVEVMLNSYSATFPLPSQPSYMNSRSWSGEYTSGATRSNELKNQSVKALSNDASMFQSFPR	651

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr11g00449	651	Pfam	Protein tyrosine and serine/threonine kinase	329	538	IPR001245	GO:0004672\|GO:0006468
	Accr11g00449	651	SMART	serkin_6	326	600	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr11g00449	651	ProSiteProfiles	Protein kinase domain profile.	326	603	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr11g00449	651	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	447	459	IPR008271	GO:0004672\|GO:0006468
	Accr11g00449	651	FunFam	Cysteine-rich receptor-like protein kinase 10	139	244	-	-
	Accr11g00449	651	CDD	STKc_IRAK	332	597	-	-
	Accr11g00449	651	Gene3D	Phosphorylase Kinase; domain 1	288	401	-	-
	Accr11g00449	651	Gene3D	-	25	130	IPR038408	-
	Accr11g00449	651	Gene3D	-	140	244	IPR038408	-
	Accr11g00449	651	ProSiteProfiles	Gnk2-homologous domain profile.	28	131	IPR002902	-
	Accr11g00449	651	Pfam	Salt stress response/antifungal	147	242	IPR002902	-
	Accr11g00449	651	Pfam	Salt stress response/antifungal	33	128	IPR002902	-
	Accr11g00449	651	FunFam	Cysteine-rich receptor-like protein kinase 10	288	401	-	-
	Accr11g00449	651	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	26	627	-	-
	Accr11g00449	651	SUPERFAMILY	Protein kinase-like (PK-like)	310	596	IPR011009	-
	Accr11g00449	651	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 10	26	131	-	-
	Accr11g00449	651	ProSiteProfiles	Gnk2-homologous domain profile.	137	244	IPR002902	-
	Accr11g00449	651	FunFam	Cysteine-rich receptor-like protein kinase 28	402	604	-	-
	Accr11g00449	651	Gene3D	Transferase(Phosphotransferase) domain 1	402	604	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr11g00449	Accr-Chr11	5726349	5729642	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr11g00449	22	613	Receptor kinase-like Gene Family	AT4G38830	51.540	0.0	614

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Accr11g00449		PK_Tyr_Ser-Thr	2.2e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr11g00449	-		-	lang:109353867	881.708