Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00441 ATGTCGACTTCACGGAGGAGTAAGGGTCGCCAGAAGATTGAGATGAAGAAGATGACCAACGGGAGCAATCTTCAGGTGACATTCTCGAAGCGTCGAACCGGGCTTTTCAAGAAAGCTAGTGAGCTTTGTACTCTTTGTGGGACTGAGGTTGCTATCATCGTCTTCTCTCCAGGCGAGAAGGTCTTCTCCTTTGGCCACCCCAGCGTCGACACCGTGGTGGACCGCTACCTCACCCGGGCCCCGCCGCCACTGACCACCGGCACCATGCAGCTGATGGAGGCTCACCGCAACGCCAACGTTCGTGACCTCATCACCCAGTTCAGTCAAGTCTCTGCTCAGCTCGACGCCGAGAAGAAGCGCACTGATGACTTGAATCATATGCGAAAGGCCACCCAATGTCAGTGCTGGTGGGCAGCTCCGATTGATGAGATGACAAAGACACAGCTTGAGGAGTTCAAGGCGGCGTTGGAGGAGCTGAAGAGGACTGTGACGAGGCAGGCTGATAGGATGGTGCTGATGCAGAGTGCTAGTAGCTCATCAAATCAGTTTTTGGCCGGAGCTTCGTCTTCGAATGTGGTGGCTCCGCCGCCGCAGCCTCCACTGCCTCATCCTCAGATGTTTCAGTCACCGCCACCGGTGGAGGTTCAAAATCCTGCTGAGTTTGATGGCGGTATAGTGCCGCCACCGCCACTCCATGGATTTGTTGGACCACCTCCAGGGTTTTACTGA 729 0.5556 MSTSRRSKGRQKIEMKKMTNGSNLQVTFSKRRTGLFKKASELCTLCGTEVAIIVFSPGEKVFSFGHPSVDTVVDRYLTRAPPPLTTGTMQLMEAHRNANVRDLITQFSQVSAQLDAEKKRTDDLNHMRKATQCQCWWAAPIDEMTKTQLEEFKAALEELKRTVTRQADRMVLMQSASSSSNQFLAGASSSNVVAPPPQPPLPHPQMFQSPPPVEVQNPAEFDGGIVPPPPLHGFVGPPPGFY 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00441 242 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Accr11g00441 242 SUPERFAMILY SRF-like 9 96 IPR036879 GO:0003677|GO:0046983
Accr11g00441 242 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Accr11g00441 242 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Accr11g00441 242 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Accr11g00441 242 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Accr11g00441 242 Coils Coil 142 169 - -
Accr11g00441 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 64 IPR002100 GO:0003677|GO:0046983
Accr11g00441 242 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Accr11g00441 242 PANTHER MADS BOX PROTEIN 10 166 - -
Accr11g00441 242 MobiDBLite consensus disorder prediction 208 242 - -
Accr11g00441 242 Gene3D - 20 83 IPR036879 GO:0003677|GO:0046983
Accr11g00441 242 Gene3D - 87 190 - -
Accr11g00441 242 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00441 Accr-Chr11 5643064 5644080 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00441 5 191 Type I MADS-box Gene Family AT5G60440 55.026 1.18e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Accr11g00441 SRF-TF 2.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00441 - - gmx:100794751 249.98