Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00420 ATGGCCAGTTTCGTAGGAACCACACAGAAGTGCACACTCTGCGATAAAACCGTCTACCCCGTCGATCGGTTAACCGCCGATGGTCGTTTTTTCCACAAGGCGTGCTTCCGATGCCACCATTGCCGGAACACCCTCAAGCTTAGCAGCTACTGTTCATTTGAGGGGGTGCTATATTGCAAACCCCATTACGATCAACTCTTCAAGCGAACTGGCAGCCTTGACAAGAGCTTTGAAGGAACACCCAAGATTCAAAAACCTGAAAAACTACCAACAGATAATGAGAATGCAAAGATTATCTCAAGTGTGTTCTTGGGCACCAAAGACAAGTGTGCTGGTTGCCAAAAGACTGTTTATCCTACCGAGAGGGTAACAGTGAATGGGACTTCACATCACAAAGGGTGCTTCAAGTGCAGCAGAGGAGGATGTACCATAACCTCAGCCAACTTCATAACTCACGAGGGAAAGCTATACTGTAAGCACCATCACATTCAACTCTTCAAAGAAAAAGGCAATTACAGCCAGCTTGACGGCGACCGTCCCGCCAGCCCTTCTCTCAAAGAAATGGAGGATGCTGTACAAGGTTTTGAAGATGGAGAGCAAGGTGGCAACGATGACTGTAACTCATTATGTGAAACAGACAGTTCGATGGTTTCAAGCACAGCTTCTCCAACTTGTCATGATGAAAATGCTTCGTGTTCATCTTCTCATCGCGAGTTTGTTTCTGAATCTGATGATGTGGATCAGCTTGCAGCAGGGGATGTTACTCCGATGATGAATCAAGACCCAAAAAGAGTTCTTGAAAAGCTGAACTTGCAGCTGTTAGATAAAAATGGAAGGGAGGTGCCAATACAGGTAAAATATGGGACTTTTGAGAAGAAGAAGAAGAAAGCTAGAAAGGAGTCTGTCATGGGAAAGAATATTGTCAAGCCTGCCAATTCATGA 942 0.4522 MASFVGTTQKCTLCDKTVYPVDRLTADGRFFHKACFRCHHCRNTLKLSSYCSFEGVLYCKPHYDQLFKRTGSLDKSFEGTPKIQKPEKLPTDNENAKIISSVFLGTKDKCAGCQKTVYPTERVTVNGTSHHKGCFKCSRGGCTITSANFITHEGKLYCKHHHIQLFKEKGNYSQLDGDRPASPSLKEMEDAVQGFEDGEQGGNDDCNSLCETDSSMVSSTASPTCHDENASCSSSHREFVSESDDVDQLAAGDVTPMMNQDPKRVLEKLNLQLLDKNGREVPIQVKYGTFEKKKKKARKESVMGKNIVKPANS 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00420 313 CDD LIM1_SF3 7 69 - -
Accr11g00420 313 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Accr11g00420 313 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Accr11g00420 313 SMART lim_4 10 62 IPR001781 -
Accr11g00420 313 SMART lim_4 109 161 IPR001781 -
Accr11g00420 313 FunFam LIM domain and actin-binding 1 5 75 - -
Accr11g00420 313 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Accr11g00420 313 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Accr11g00420 313 FunFam LIM domain and actin-binding 1 104 174 - -
Accr11g00420 313 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Accr11g00420 313 Gene3D Cysteine Rich Protein 105 174 - -
Accr11g00420 313 Gene3D Cysteine Rich Protein 5 75 - -
Accr11g00420 313 PANTHER OS06G0237300 PROTEIN 6 90 - -
Accr11g00420 313 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Accr11g00420 313 Pfam LIM domain 110 165 IPR001781 -
Accr11g00420 313 Pfam LIM domain 11 65 IPR001781 -
Accr11g00420 313 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00420 Accr-Chr11 5410830 5415416 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Accr11g00420 LIM 1.1e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00420 K09377 - mnt:21388538 320.472