Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00402 ATGGAGCCTAGTGAGACAATTATCTCTGAAGAATGGAGTTCCATTAGTGGGTTTTACACTGCCCAAGAAGATGAGTTCATGACCCAGTTTTATGAAAACTGTTCAGTCCCAGAGGATTTGTATGGAAATCCCAACTTGTTGGGATTTCCATCTTCTTCTTCTTCTTCTGCATTTTGGCCTACACACTTCACTGGTGATGACAGCTTCTATTTTCCTTCAAATGTTTCTCATGATCCTACTAATAACAACTTTGGTTCCATATCCATGTGTTGTGAAGTTCAAGTTTCTGAACCAGCACAAGACGATGATCATAAAACCAGCAACCTGGAGAGAAAGAGATCAATGAGTTCAGTTGAGATACAGAAGAACAAGAGGAATGTTGAACCTAGGAGGAATAATAATCCAACGTGTTCTAAAAGCAACAAGGAAGAGGAAAGAAGCAATAATGATTATGACAGCCTTTACTCTAGCAGATTCTGCTCATCATCAGAGGATGACCCCATTGTTGCTTCTTCTCATCAGGAAGATGACACAAACCCTAAAAACAATATAGATCTCAAGTCAAATCTCAAATCAAGATCTAATACAGGTCCTTCCACTGAGGCACAGAGTCTCTATGCAAGGCGAAGAAGACTGAGAATAAATGAAAGGTTGAGAATTTTACAGAACCTTGTCCCTAGTGGAACAAAGGTGGATATAAGCACTATGCTTGAGGAAGCTGTCCAATATGTGAAATTTTTACAGCTACAAATTAAGCTTCTGAGCTCTGATGATCTGTGGATGTACGCTCCAATTGCTTTCAATGGATTGAATATTGGATTAGACCTCAATATCACCCCAACCAGACAACCATGA 855 0.3953 MEPSETIISEEWSSISGFYTAQEDEFMTQFYENCSVPEDLYGNPNLLGFPSSSSSSAFWPTHFTGDDSFYFPSNVSHDPTNNNFGSISMCCEVQVSEPAQDDDHKTSNLERKRSMSSVEIQKNKRNVEPRRNNNPTCSKSNKEEERSNNDYDSLYSSRFCSSSEDDPIVASSHQEDDTNPKNNIDLKSNLKSRSNTGPSTEAQSLYARRRRLRINERLRILQNLVPSGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAFNGLNIGLDLNITPTRQP 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00402 284 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 56 256 IPR045843 GO:0003700|GO:0006355
Accr11g00402 284 MobiDBLite consensus disorder prediction 97 129 - -
Accr11g00402 284 MobiDBLite consensus disorder prediction 97 150 - -
Accr11g00402 284 MobiDBLite consensus disorder prediction 165 203 - -
Accr11g00402 284 FunFam Basic helix-loop-helix transcription factor 199 256 - -
Accr11g00402 284 Gene3D - 199 261 IPR036638 GO:0046983
Accr11g00402 284 Pfam Helix-loop-helix DNA-binding domain 208 248 IPR011598 GO:0046983
Accr11g00402 284 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 198 264 IPR036638 GO:0046983
Accr11g00402 284 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 198 247 IPR011598 GO:0046983
Accr11g00402 284 SMART finulus 204 253 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00402 Accr-Chr11 5127636 5129520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00402 121 274 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 56.098 4.02e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr11g00402 HLH 3.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00402 - - pcin:129285148 326.635