Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00399 ATGGCTTTAGAAGCTCTCAATTCTCCTACTACCGCCCCGACTTCCTTCACCTTCAACTACGACCAAGAAGATTATGATGATCTCGATCTTCACTGGGCTAAGGGAAAGCGTTCCAAACGACCTCGTTTCGATTCCAACAATCCTCCTTCTGAGGAAGAGTACCTCGCTCTCTGTCTTATCATGCTCGCCCACAGCGGCCACAAGGCATCATCATCCTCTCCACCGCCGCCTCGTCCTTCCTCTTCATCGTCGCCTCCTATTAACCCTGTTGTGAAGCTCTCTCATAGGTGTACGGTCTGCAATAAAGCCTTCTCTTCTTACCAAGCTCTCGGTGGCCACAAGGCCAGCCACCGTAAGTCATCTTCGGAGTCCGCCACCGCTGCCGCTGAAAACGCCGCCTCCACCTCCTCTGCTGGTGCTGCCGCCACCGGAAGGTTGCACGAGTGTACCATCTGTCACAAAGTCTTCCCTACCGGTCAGGCCTTGGGTGGACACAAGAGATGCCACTACGACGGCGGCTCCGGCTCCGGCAACGCAAACAGCAGTAGCGCCGGCGCCGGAGTGTCCTCATCGGAGGGAGGTGGCGCGTCTACTGTCAGCCTCCGTGGGTTCGACTTAAACCTGCCGGCACCGCTCATGGACTTATCTCCGCCAAGGTTTGGAGACGATTATTCTGGGATGAAGAAGATCGGAGTTGAGCAAGAGGTGGAGAGTCCGTTGCCGGTAGCTGCCGCCGGTAATAAGAGAAGACGTTTGCTTTTTACCGGTGATGAAGAAGACGATGTAAAGCCTTCGTTGTTGTTACAGAATTGA 813 0.5486 MALEALNSPTTAPTSFTFNYDQEDYDDLDLHWAKGKRSKRPRFDSNNPPSEEEYLALCLIMLAHSGHKASSSSPPPPRPSSSSSPPINPVVKLSHRCTVCNKAFSSYQALGGHKASHRKSSSESATAAAENAASTSSAGAAATGRLHECTICHKVFPTGQALGGHKRCHYDGGSGSGNANSSSAGAGVSSSEGGGASTVSLRGFDLNLPAPLMDLSPPRFGDDYSGMKKIGVEQEVESPLPVAAAGNKRRRLLFTGDEEDDVKPSLLLQN 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00399 270 ProSitePatterns Zinc finger C2H2 type domain signature. 149 169 IPR013087 -
Accr11g00399 270 ProSiteProfiles Zinc finger C2H2 type domain profile. 147 169 IPR013087 -
Accr11g00399 270 MobiDBLite consensus disorder prediction 174 194 - -
Accr11g00399 270 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 38 210 IPR044653 GO:0003700
Accr11g00399 270 MobiDBLite consensus disorder prediction 66 88 - -
Accr11g00399 270 Gene3D Classic Zinc Finger 93 169 - -
Accr11g00399 270 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Accr11g00399 270 Pfam C2H2-type zinc finger 147 171 - -
Accr11g00399 270 Pfam C2H2-type zinc finger 95 119 - -
Accr11g00399 270 SMART c2h2final6 95 117 IPR013087 -
Accr11g00399 270 SMART c2h2final6 147 169 IPR013087 -
Accr11g00399 270 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Accr11g00399 270 SUPERFAMILY beta-beta-alpha zinc fingers 95 169 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00399 Accr-Chr11 5102407 5103219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00399 1 241 C2H2 Transcription Factor Family AT1G27730 45.783 8.16e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr11g00399 zf-C2H2_6 8.4e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00399 - - gmx:100806788 242.662