Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00385 ATGGAGCCACCCTCAGATCAAATAGGAAGCAAAACCAGGGAGCTAACCGGCCATAACAATATGTCAGAGCAGCTGCATACAATTGATCCGGGAGCTACACATTCTGAATTGCCAGAAAAAACTAATCAGATTGGCTCTCAATCTTTGGACAATGAACAAAGGGTTGTTGGTACTAGGGAAAATAACTCTCTTCTTGATGAAAAATCACCTTCAGATGGTGTGACTGGGAATTCTGTTATTCAACTTCCTGCACAACCTCAATGTGACTTAGACAAGAGTTGTCAAACTGAAGAAGGTTCAAGTTTTCAACATCATACTTTAGAACTGGGCAATGCTATTGGCATGGATGCTTCCTCAGATCACATGGGTAGCGAAACTAGAAAGTCAATGTGCCATATCGATAATGCCTCAGAACAGTTGCATACAATTCCTTCCAGGACTGCTGATTTTAAGATGTCTGAGAAAACTAATCAGACTGGCTCTGAACTTTTGAACAATGAACAAAGGGTCCTAGGTACTGGGGAAACCAGCTCTCTTCTTGATGGCAAACAACTTACAGTTTCTGACAGTATGACTGGAGATTCTGTCATTCAATTGCCAACGCAATCGCAATTTGACGTAGAAAATAGTTGCCAGAATGGAGGAAGTTCATGCTTTCAGCATAATACCTTAAAACAGGTTTCTGGTTCTTTATCAAATGATGAATCCCATAGCAAATGTGAGCAGGCCTCCCAAAATGTTCATAATGAAACTGTGGAAATAAGTGGTGCAAATGAACAATTAGATCCACCTTCTCAAGATGTTGCCAAGGGAAGTAGTCCTAACTCTTTGCAAAGAAACTCCACACGGGCAAGTCGTGCCTGGTTAGGAGGCAAGGATAGAAGAACTGCAAGATCATTGAAGAAAAAATACTTGCTAAGAAGTAGTGACAGAGTTTTGCGGTCTAGGGTCCGTGAAAAGCCTAAACCACCCCAATCAAACACTGATCCGGTTAATTTGGATCATGCTGTAGAAAATAGAAGAAAACGCAGGAAGAATAAGGTTAGAGGAAGGAGAGTGACAGATGAGTTTTCAAGAATCAGAGCACGCCTAAGATATTTTTTAAGTCGAGTGAGCTATGAGCAGAACTTGATTGATGCTTATTCTGGTGAGGGCTGGAAAGGATATAGCCTGGAAAAATTAAAGCCTGAGAAGGAGCTTCAACGTGCTAAGTCTAAAATACTCAGTTTTAAATTGAAAATTAGGGATTTGTTTCGACATTTGGATACACTGTGTGCTGAAGGGAGGCTTCCACAATCTTTGTTTGATTCTGAAGGAGAGATTTGCAGTGAGGATATATTTTGTGCAAAATGCAGGTCCAAAGACTTAACCACTGGTAATGATATAATACTTTGTGATGGTGCATGTGATCGTGGATTTCACCAGTTATGTTTGGAACCTCCATTGTTATCTGAGAATATTCCACCTGATGATGAGGGTTGGCTATGCCCGGGATGTGATTGCAAGGATGACTGTTTTGATCTCCTTAATGACTCCTTCGGAACAAGCCTCTCTATTTGTGATTCCTGGGAGAGGGTTTTTCCAGAGGCAGCTGCAGCTGCTGGAAATAAAGTGGATGACAACTTGGGACTTCCATCTGATGATTCCGGTGATGATGATTATAATCCTGATGTTGCAGAAGATGAGGACGTTGAAGGAGGCAAGTCAAGTTCTGATGAATCTGAAGAAGCTTCTGCTTCTGAGAAAATGGGGGCTTCACGTAATGAGGATCCATACTCAGGCCTTCCTTCTGAAGATTCAGAGGACAATGATTATGATCCAAATGCTGTAGATCATGAGAAAGATGTAGCTGAAGAAAGTTCAAGTTCTGATTTCACGTCTGATTCTGAGGACCTTGCTGATGTAGTTAAGGGTAATGCATTATCTAGACAGGATAACTATCCTGTACCTGCATCATCTTTGCCAGAGCTAGACCCTGGTGAAGAAGATTCCGCTCCTGTTTTTGGGAAAAGACTAATTGAAAGGTTGGACTACAAAAAACTGTATGATGAGACCTACAAAAATGCTTCATCTGATACTAGCGATGATGAAGATTGGACTGCTAGTCCTGGTTCAAGTAGGAAAAAGAAAGCCACTAGCAAAGGGCCATCAGTGTCACCAAATGGGAAAACCTCAATACCGGATCATATGCCGAAAGGAACTGAAAATACTCCTAAGAGTAATAGTCGTCCAACTAAAGTTGAAAATATGGACAATTCACCCACTAAATCACTTGAAGGCTCTAAGAGGGTTGGTTCAAATGACAAAAAACGAGGATCTTCAACTCACAAAAGACTTGGGGAAGATGTAGTTAAGGTTCTTCACAAAAACTTCAAAGAAAATCAGTACCCAGACCGTGCCACAAAAGAAAGCTTAGCACAAGAACTTGGACTTACTTTCAACCAGGTTAGCAAATGGTTTGAGAATGCTCGTTGGAGCTTTCGGAATTCCCCACGTATGGAAGCCATGGTGAGTAAAAGTGCTTCACTGGGCGCCACTTCCAGCGGAGTTGAAAATGGAATAGTACCTGGTGATGAGAAGAGGGACTCAAAACCAGTGCCTCAGGAGGGGAATAATATACAGAAATCAAAATCCCAAAGCTCTAGAAAGAGGAAGCAAAATACAGATACTGAGGAATCTGGTGCAAATATAAACATTGATAGTGCGGCAACAAGTCCTCCTGTTCACTCACCTAGAGCTAGTGAAGTGCAAAGAAATCACAAAATGAAAACAAGGAAGAGAAAATGA 2787 0.4141 MEPPSDQIGSKTRELTGHNNMSEQLHTIDPGATHSELPEKTNQIGSQSLDNEQRVVGTRENNSLLDEKSPSDGVTGNSVIQLPAQPQCDLDKSCQTEEGSSFQHHTLELGNAIGMDASSDHMGSETRKSMCHIDNASEQLHTIPSRTADFKMSEKTNQTGSELLNNEQRVLGTGETSSLLDGKQLTVSDSMTGDSVIQLPTQSQFDVENSCQNGGSSCFQHNTLKQVSGSLSNDESHSKCEQASQNVHNETVEISGANEQLDPPSQDVAKGSSPNSLQRNSTRASRAWLGGKDRRTARSLKKKYLLRSSDRVLRSRVREKPKPPQSNTDPVNLDHAVENRRKRRKNKVRGRRVTDEFSRIRARLRYFLSRVSYEQNLIDAYSGEGWKGYSLEKLKPEKELQRAKSKILSFKLKIRDLFRHLDTLCAEGRLPQSLFDSEGEICSEDIFCAKCRSKDLTTGNDIILCDGACDRGFHQLCLEPPLLSENIPPDDEGWLCPGCDCKDDCFDLLNDSFGTSLSICDSWERVFPEAAAAAGNKVDDNLGLPSDDSGDDDYNPDVAEDEDVEGGKSSSDESEEASASEKMGASRNEDPYSGLPSEDSEDNDYDPNAVDHEKDVAEESSSSDFTSDSEDLADVVKGNALSRQDNYPVPASSLPELDPGEEDSAPVFGKRLIERLDYKKLYDETYKNASSDTSDDEDWTASPGSSRKKKATSKGPSVSPNGKTSIPDHMPKGTENTPKSNSRPTKVENMDNSPTKSLEGSKRVGSNDKKRGSSTHKRLGEDVVKVLHKNFKENQYPDRATKESLAQELGLTFNQVSKWFENARWSFRNSPRMEAMVSKSASLGATSSGVENGIVPGDEKRDSKPVPQEGNNIQKSKSQSSRKRKQNTDTEESGANINIDSAATSPPVHSPRASEVQRNHKMKTRKRK 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00385 928 ProSiteProfiles Zinc finger PHD-type profile. 445 502 IPR019787 -
Accr11g00385 928 MobiDBLite consensus disorder prediction 561 583 - -
Accr11g00385 928 MobiDBLite consensus disorder prediction 311 352 - -
Accr11g00385 928 Pfam PHD-finger 447 502 IPR019787 -
Accr11g00385 928 MobiDBLite consensus disorder prediction 537 668 - -
Accr11g00385 928 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 236 918 - -
Accr11g00385 928 MobiDBLite consensus disorder prediction 258 285 - -
Accr11g00385 928 Gene3D - 772 841 - -
Accr11g00385 928 Pfam Homeodomain 781 825 IPR001356 GO:0003677
Accr11g00385 928 FunFam Homeobox protein HAT3.1 428 504 - -
Accr11g00385 928 MobiDBLite consensus disorder prediction 258 293 - -
Accr11g00385 928 CDD PHD_PRHA_like 447 499 IPR045876 -
Accr11g00385 928 MobiDBLite consensus disorder prediction 891 912 - -
Accr11g00385 928 CDD homeodomain 778 830 IPR001356 GO:0003677
Accr11g00385 928 ProSitePatterns Zinc finger PHD-type signature. 448 499 IPR019786 -
Accr11g00385 928 MobiDBLite consensus disorder prediction 762 783 - -
Accr11g00385 928 MobiDBLite consensus disorder prediction 607 621 - -
Accr11g00385 928 MobiDBLite consensus disorder prediction 695 761 - -
Accr11g00385 928 MobiDBLite consensus disorder prediction 545 560 - -
Accr11g00385 928 SUPERFAMILY FYVE/PHD zinc finger 437 505 IPR011011 -
Accr11g00385 928 MobiDBLite consensus disorder prediction 9 29 - -
Accr11g00385 928 SMART HOX_1 770 834 IPR001356 GO:0003677
Accr11g00385 928 MobiDBLite consensus disorder prediction 686 783 - -
Accr11g00385 928 SMART PHD_3 447 500 IPR001965 -
Accr11g00385 928 SUPERFAMILY Homeodomain-like 770 833 IPR009057 -
Accr11g00385 928 MobiDBLite consensus disorder prediction 1 55 - -
Accr11g00385 928 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 440 496 IPR013083 -
Accr11g00385 928 MobiDBLite consensus disorder prediction 834 849 - -
Accr11g00385 928 MobiDBLite consensus disorder prediction 36 55 - -
Accr11g00385 928 MobiDBLite consensus disorder prediction 60 79 - -
Accr11g00385 928 ProSiteProfiles 'Homeobox' domain profile. 770 830 IPR001356 GO:0003677
Accr11g00385 928 MobiDBLite consensus disorder prediction 834 928 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00385 Accr-Chr11 4918737 4923517 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00385 246 831 Homeobox Transcription Factor Family AT3G19510 43.146 1.94e-132 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Accr11g00385 PHD 1.2e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00385 - - pcin:129285574 1385.55