Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00384 ATGCAAAGTGATTCAGGCAAGAGTTGGCAGAATGGGGAAGGTTCATCCTTTCGACATGATACCTTAGAGGCCAATACTATCAGCATGGAGCCACCCTCAGATCAAATAGGAAGCAAAACCAGGGAGCTAACCGGCCATAACAATATGTCAGAGCAGCTGCATACAATTGATCCGGGAGCTACACATTCTGAATTGCCAGAAAAAACTAATCAGATTGGCTCTCAATCTTTGGACAATGAACAAAGGGTTGTTGGTACTAGGGAAAATAACTCTCTTCTTGATGAAAAATCACCTTCAGATGGTGTGACTGGGAATTCTGTTATTCAACTTCCTGCACAACCTCAATGTGACTTAGACAAGAGTTGTCAAACTGAAGAAGGTTCAAGTTTTCAACATCATACTTTAGAACTGGGCAATGCTATTGGCATGGATGCTTCCTCAGATCACATGGGTAGCGAAACTAGAAAGTCAATGTGCCATATCGATAATGCCTCAGAACAGTTGCATACAATTCCTTCCAGGACTGCTGATTTTAAGATGTCTGAGAAAACTAATCAGACTGGCTCTGAACTTTTGAACAATGAACAAAGGGTCCTAGGTACTGGGGAAACCAGCTCTCTTCTTGATGGCAAACAACTTACAGTTTCTGACAGTATGACTGGAGATTCTGTCATTCAATTGCCAACGCAATCGCAATTTGACGTAGAAAATAGTTGCCAGAATGGAGGAAGTTCATGCTTTCAGCATAATACCTTAAAACAGGTTTCTGGTTCTTTATCAAATGATGAATCCCATAGCAAATGTGAGCAGGCCTCCCAAAATGTTCATAATGAAACTGTGGAAATAAGTGGTGCAAATGAACAATTAGATCCACCTTCTCAAGATGTTGCCAAGGGAAGTAGTCCTAACTCTTTGCAAAGAAACTCCACACGGGCAAGTCGTGCCTGGTTAGGAGGCAAGGATAGAAGAACTGCAAGATCATTGAAGAAAAAATACTTGCTAAGAAGTAGTGACAGAGTTTTGCGGTCTAGGGTCCGTGAAAAGCCTAAACCACCCCAATCAAACACTGATCCGGTTAATTTGGATCATGCTGTAGAAAATAGAAGAAAACGCAGGAAGAATAAGGTTAGAGGAAGGAGAGTGACAGATGAGTTTTCAAGAATCAGAGCACGCCTAAGATATTTTTTAAGTCGAGTGAGCTATGAGCAGAACTTGATTGATGCTTATTCTGGTGAGGGCTGGAAAGGATATAGCCTGGAAAAATTAAAGCCTGAGAAGGAGCTTCAACGTGCTAAGTCTAAAATACTCAGTTTTAAATTGAAAATTAGGGATTTGTTTCGACATTTGGATACACTGTGTGCTGAAGGGAGGCTTCCACAATCTTTGTTTGATTCTGAAGGAGAGATTTGCAGTGAGGATATATTTTGTGCAAAATGCAGGTCCAAAGACTTAACCACTGGTAATGATATAATACTTTGTGATGGTGCATGTGATCGTGGATTTCACCAGTTATGTTTGGAACCTCCATTGTTATCTGAGAATATTCCACCTGATGATGAGGGTTGGCTATGCCCGGGATGTGATTGCAAGGATGACTGTTTTGATCTCCTTAATGACTCCTTCGGAACAAGCCTCTCTATTTGTGATTCCTGGGAGAGGGTTTTTCCAGAGGCAGCTGCAGCTGCTGGAAATAAAGTGGATGACAACTTGGGACTTCCATCTGATGATTCCGGTGATGATGATTATAATCCTGATGTTGCAGAAGATGAGGACGTTGAAGGAGGCAAGTCAAGTTCTGATGAATCTGAAGAAGCTTCTGCTTCTGAGAAAATGGGGGCTTCACGTAATGAGGATCCATACTCAGGCCTTCCTTCTGAAGATTCAGAGGACAATGATTATGATCCAAATGCTGTAGATCATGAGAAAGATGTAGCTGAAGAAAGTTCAAGTTCTGATTTCACGTCTGATTCTGAGGACCTTGCTGATGTAGTTAAGGGTAATGCATTATCTAGACAGGATAACTATCCTGTACCTGCATCATCTTTGCCAGAGCTAGACCCTGGTGAAGAAGATTCCGCTCCTGTTTTTGGGAAAAGACTAATTGAAAGGTTGGACTACAAAAAACTGTATGATGAGACCTACAAAAATGCTTCATCTGATACTAGCGATGATGAAGATTGGACTGCTAGTCCTGGTTCAAGTAGGAAAAAGAAAGCCACTAGCAAAGGGCCATCAGTGTCACCAAATGGGAAAACCTCAATACCGGATCATATGCCGAAAGGAACTGAAAATACTCCTAAGAGTAATAGTCGTCCAACTAAAGTTGAAAATATGGACAATTCACCCACTAAATCACTTGAAGGCTCTAAGAGGGTTGGTTCAAATGACAAAAAACGAGGATCTTCAACTCACAAAAGACTTGGGGAAGATGTAGTTAAGGTTCTTCACAAAAACTTCAAAGAAAATCAGTACCCAGACCGTGCCACAAAAGAAAGCTTAGCACAAGAACTTGGACTTACTTTCAACCAGGTTAGCAAATGGTTTGAGAATGCTCGTTGGAGCTTTCGGAATTCCCCACGTATGGAAGCCATGGTGAGTAAAAGTGCTTCACTGGGCGCCACTTCCAGCGGAGTTGAAAATGGAATAGTACCTGGTGATGAGAAGAGGGACTCAAAACCAGTGCCTCAGGAGGGGAATAATATACAGAAATCAAAATCCCAAAGCTCTAGAAAGAGGAAGCAAAATACAGATACTGAGGAATCTGGTGCAAATATAAACATTGATAGTGCGGCAACAAGTCCTCCTGTTCACTCACCTAGAGCTAGTGAAGTGCAAAGAAATCACAAAATGAAAACAAGGAAGAGAAAATGA 2871 0.4152 MQSDSGKSWQNGEGSSFRHDTLEANTISMEPPSDQIGSKTRELTGHNNMSEQLHTIDPGATHSELPEKTNQIGSQSLDNEQRVVGTRENNSLLDEKSPSDGVTGNSVIQLPAQPQCDLDKSCQTEEGSSFQHHTLELGNAIGMDASSDHMGSETRKSMCHIDNASEQLHTIPSRTADFKMSEKTNQTGSELLNNEQRVLGTGETSSLLDGKQLTVSDSMTGDSVIQLPTQSQFDVENSCQNGGSSCFQHNTLKQVSGSLSNDESHSKCEQASQNVHNETVEISGANEQLDPPSQDVAKGSSPNSLQRNSTRASRAWLGGKDRRTARSLKKKYLLRSSDRVLRSRVREKPKPPQSNTDPVNLDHAVENRRKRRKNKVRGRRVTDEFSRIRARLRYFLSRVSYEQNLIDAYSGEGWKGYSLEKLKPEKELQRAKSKILSFKLKIRDLFRHLDTLCAEGRLPQSLFDSEGEICSEDIFCAKCRSKDLTTGNDIILCDGACDRGFHQLCLEPPLLSENIPPDDEGWLCPGCDCKDDCFDLLNDSFGTSLSICDSWERVFPEAAAAAGNKVDDNLGLPSDDSGDDDYNPDVAEDEDVEGGKSSSDESEEASASEKMGASRNEDPYSGLPSEDSEDNDYDPNAVDHEKDVAEESSSSDFTSDSEDLADVVKGNALSRQDNYPVPASSLPELDPGEEDSAPVFGKRLIERLDYKKLYDETYKNASSDTSDDEDWTASPGSSRKKKATSKGPSVSPNGKTSIPDHMPKGTENTPKSNSRPTKVENMDNSPTKSLEGSKRVGSNDKKRGSSTHKRLGEDVVKVLHKNFKENQYPDRATKESLAQELGLTFNQVSKWFENARWSFRNSPRMEAMVSKSASLGATSSGVENGIVPGDEKRDSKPVPQEGNNIQKSKSQSSRKRKQNTDTEESGANINIDSAATSPPVHSPRASEVQRNHKMKTRKRK 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00384 956 ProSiteProfiles 'Homeobox' domain profile. 798 858 IPR001356 GO:0003677
Accr11g00384 956 CDD homeodomain 806 858 IPR001356 GO:0003677
Accr11g00384 956 MobiDBLite consensus disorder prediction 573 588 - -
Accr11g00384 956 MobiDBLite consensus disorder prediction 790 811 - -
Accr11g00384 956 MobiDBLite consensus disorder prediction 182 211 - -
Accr11g00384 956 SMART PHD_3 475 528 IPR001965 -
Accr11g00384 956 Pfam PHD-finger 475 530 IPR019787 -
Accr11g00384 956 MobiDBLite consensus disorder prediction 723 789 - -
Accr11g00384 956 MobiDBLite consensus disorder prediction 635 649 - -
Accr11g00384 956 MobiDBLite consensus disorder prediction 714 811 - -
Accr11g00384 956 FunFam Homeobox protein HAT3.1 456 532 - -
Accr11g00384 956 MobiDBLite consensus disorder prediction 862 956 - -
Accr11g00384 956 SUPERFAMILY FYVE/PHD zinc finger 465 533 IPR011011 -
Accr11g00384 956 MobiDBLite consensus disorder prediction 862 877 - -
Accr11g00384 956 MobiDBLite consensus disorder prediction 1 82 - -
Accr11g00384 956 MobiDBLite consensus disorder prediction 1 57 - -
Accr11g00384 956 MobiDBLite consensus disorder prediction 88 107 - -
Accr11g00384 956 MobiDBLite consensus disorder prediction 64 82 - -
Accr11g00384 956 MobiDBLite consensus disorder prediction 339 380 - -
Accr11g00384 956 MobiDBLite consensus disorder prediction 589 611 - -
Accr11g00384 956 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 264 946 - -
Accr11g00384 956 MobiDBLite consensus disorder prediction 565 696 - -
Accr11g00384 956 MobiDBLite consensus disorder prediction 286 313 - -
Accr11g00384 956 ProSitePatterns Zinc finger PHD-type signature. 476 527 IPR019786 -
Accr11g00384 956 MobiDBLite consensus disorder prediction 286 321 - -
Accr11g00384 956 SUPERFAMILY Homeodomain-like 798 861 IPR009057 -
Accr11g00384 956 Gene3D - 800 869 - -
Accr11g00384 956 ProSiteProfiles Zinc finger PHD-type profile. 473 530 IPR019787 -
Accr11g00384 956 SMART HOX_1 798 862 IPR001356 GO:0003677
Accr11g00384 956 CDD PHD_PRHA_like 475 527 IPR045876 -
Accr11g00384 956 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 468 524 IPR013083 -
Accr11g00384 956 MobiDBLite consensus disorder prediction 919 940 - -
Accr11g00384 956 Pfam Homeodomain 809 853 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00384 Accr-Chr11 4918737 4923601 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00384 274 859 Homeobox Transcription Factor Family AT3G19510 43.146 5.25e-132 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Accr11g00384 PHD 1.3e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00384 - - pcin:129285574 1413.28