Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00343 ATGGCTACCCTTAATAAATCAACGATGATGGTATCTTCAGACTCCTTAGAACAGAAGGGGAAAAATATGGCTGAATCAACTGCCAACATGCTTCCCTGTCCTTTGATCCAGCAGCCTCGTATCTCCTTGGATGGCCCAGTGGCTATTCTGTGGGATATTGAAAATTGTCCAGTTCCAAGTGATGTGCGCCCTGAAGATGTAGCTTATAATATAAGACTGGCTTTGAGGGTGCACCCAATAATTAAAGGAGCTGTTATGCTGTTTTCTGCTTATGGTGATTTCCATGCCTTCCCCAGGCGACTCAGAGAGGGCTGTCAGAGAACTGGTGTTAAGCTTATTGATGTTCCCAATGGGAGAAAGGATGCTGCAGATAAGGCTATCTTGGTGGACATGTTCTTATTTGCCCTTGACAACCCTCCCCCTTCCTCCATTATGCTGATATCCGGGGATGTTGATTTTGCTCCAGCACTTCACATTCTTGGTCAACGTGGTTATACAGTTATTCTTGTCATCCCAGCTAACGTGGGTGTTTCATCTGCCCTAATTAATGCGGGTAAATTTGTTTGGGACTGGCCTAGTGTGGCTCGTGGTGAAGGCTTTGTGCCTTCCCCAAAGGTTTTAGTTCCACCTCGTATGAATCCAGCTGAGGTTGCTGGATATCTGATGGGGATCCATATCAATGAAAATACTCTTGGACAAAATGAGGAAGAAGCAATAGTTTACAGAGGAATATCCCAGAGCTATTATAATTCTAGGGATTTCTCGGTTGCGTCACAGTCTCTATCTGATTACAACAATGGCACGTTAAATGGAGGACCCTCTCTTCCTACAGCTTTAAGGTCATCAAACAGCCTTCCTATTGGATTTAATGGCGCTTCAGGAGGACCTATTTCTTCCACTGACCAAAATGAAATCCCATTGTGGGTACAACCTGGGGATTTAAATGGTCTCAAGGGCCAGTTGGTAAAGTTGCTTGAACTTTCAGGGGGATCCCTGCCCCTGACCCGGGTTCCAACTGAGTACCATAAATGTTTTGGGAGGCCTCTTTGTGTATCAGAATATGGAGCATTCAAGTTAGTAAATCTTTTCAAGAAGATGGGTGATTCCATGGCTGTAGAAGGGAAGGGGAATCGGAGGTTTGTGTATCTTCGGAATCGGAAAGCAAGCCCAAGCGCACCTCCTTTGGCTCTAGCACAGAAAGATAAGAAAGGAAGGGGGGCTCAGGAAGAGAATGTGGATATTGTCACCGGTGGATGCTCTTCAGATGAGTTGTCAGATGAAGATAGAATTGTCATTGAAGAGCAGGATGAGAGAAGTGGAATAGGAAAGGGCCATCAGGGAAGAGCATCCAGATGTGAAATTGATGACAATCTTGAGCAGTTCAAGTATGAGCTACAGGAGATTCTAGTCAGCTATTCTTGCCGAATATTTCTTGGTTGTTTTGAAGAAATATACCAGCAACGGTACAAGAAACAACTGGAATATCAGAGGTTTGGTGTGGACAAGTTGGAGGATTTGCTTGAGAAAGTGAGTGACGTGGTGGAATTACACGAAGAACCAGTAAGCAGCAGGAAGTTCCTGTCTGCTATGGGTGGGTAG 1599 0.449 MATLNKSTMMVSSDSLEQKGKNMAESTANMLPCPLIQQPRISLDGPVAILWDIENCPVPSDVRPEDVAYNIRLALRVHPIIKGAVMLFSAYGDFHAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPANVGVSSALINAGKFVWDWPSVARGEGFVPSPKVLVPPRMNPAEVAGYLMGIHINENTLGQNEEEAIVYRGISQSYYNSRDFSVASQSLSDYNNGTLNGGPSLPTALRSSNSLPIGFNGASGGPISSTDQNEIPLWVQPGDLNGLKGQLVKLLELSGGSLPLTRVPTEYHKCFGRPLCVSEYGAFKLVNLFKKMGDSMAVEGKGNRRFVYLRNRKASPSAPPLALAQKDKKGRGAQEENVDIVTGGCSSDELSDEDRIVIEEQDERSGIGKGHQGRASRCEIDDNLEQFKYELQEILVSYSCRIFLGCFEEIYQQRYKKQLEYQRFGVDKLEDLLEKVSDVVELHEEPVSSRKFLSAMGG 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00343 532 CDD PIN_limkain_b1_N_like 46 172 - -
Accr11g00343 532 Gene3D - 313 382 IPR041966 -
Accr11g00343 532 Gene3D - 453 523 IPR041966 -
Accr11g00343 532 CDD LOTUS 458 520 - -
Accr11g00343 532 PANTHER LIMKAIN B LKAP 42 496 IPR024768 GO:0005777|GO:0010468
Accr11g00343 532 ProSiteProfiles OST-type HTH domain profile. 457 531 IPR025605 -
Accr11g00343 532 Pfam OST-HTH/LOTUS domain 315 381 IPR025605 -
Accr11g00343 532 Pfam OST-HTH/LOTUS domain 458 520 IPR025605 -
Accr11g00343 532 Pfam NYN domain 46 186 IPR021139 GO:0004540
Accr11g00343 532 CDD LOTUS 314 383 - -
Accr11g00343 532 ProSiteProfiles OST-type HTH domain profile. 313 385 IPR025605 -
Accr11g00343 532 Gene3D - 44 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00343 Accr-Chr11 4457016 4458614 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00343 43 197 C2H2 Transcription Factor Family AT5G61190 41.290 1.57e-28 119