Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00330 ATGTCCTCTGACCCACCACCTTCCTCCTCCTCTTTTCACCCTCCCACCTCCCTCTCCCCCGACCAAGAACTCTCTGTCATCGTTGCCGCACTAACCAACGTCGTCATTGGCTCCACATCCGACAATCTCCCTTACCACCTCAACTTGCCCTACTCCTCTGCCGCCAGCGACGTAGTCCACAATGAAAACTACGCTGGGCCATCCCAGACTGTTGAAGCCTCCCGCCCTGATTTCGGATTTGCCTCCGGCTCCGGCTCTAAGTTGTTACCAGATGAGATAAGTGGGAACAGACAGCCGCAGAAGAGGGCGAAGAAGAAGTACAGGGGAGTGAGGCAGAGGCCATGGGGGAAATGGGCGGCGGAGATTCGAGACCCGAGACGGGCGACCCGGGTCTGGCTGGGAACCTTCAAGACGGAGGAGGAAGCAGCTCACGCGTACGATAAAGCAGCCATGGAGTTCCGTGGGCCCCGCGCTAAGTTGAATTTTCCTTTCTCTGATGACTCGTTGCTGAATTTGCAGGCCACTCAGCTGCCGGAAGCTCCTTCAACTTCGGCGGTGGCGTCAGTGGCTGAACAGGAGAATACCGAGAATCTGAACAGCGGAATGGAAGCGATGGGGACTGAGGGTGAATTCTGGGATAGGATTGGAAAAGCAGATTTGGAACAGTGGTTGATGGATTTTCCCACCGGAGACAGTTCTGACTCTGCCCCCGGAACTACTCACAGTTGGTGA 732 0.5601 MSSDPPPSSSSFHPPTSLSPDQELSVIVAALTNVVIGSTSDNLPYHLNLPYSSAASDVVHNENYAGPSQTVEASRPDFGFASGSGSKLLPDEISGNRQPQKRAKKKYRGVRQRPWGKWAAEIRDPRRATRVWLGTFKTEEEAAHAYDKAAMEFRGPRAKLNFPFSDDSLLNLQATQLPEAPSTSAVASVAEQENTENLNSGMEAMGTEGEFWDRIGKADLEQWLMDFPTGDSSDSAPGTTHSW 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00330 243 Pfam AP2 domain 106 155 IPR001471 GO:0003700|GO:0006355
Accr11g00330 243 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
Accr11g00330 243 PANTHER DNA-BINDING DOMAIN 79 191 IPR044808 GO:0003700|GO:0009873
Accr11g00330 243 MobiDBLite consensus disorder prediction 66 109 - -
Accr11g00330 243 SMART rav1_2 106 169 IPR001471 GO:0003700|GO:0006355
Accr11g00330 243 Gene3D AP2/ERF domain 105 164 IPR036955 GO:0003700|GO:0006355
Accr11g00330 243 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Accr11g00330 243 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Accr11g00330 243 SUPERFAMILY DNA-binding domain 106 165 IPR016177 GO:0003677
Accr11g00330 243 FunFam Ethylene-responsive transcription factor 2 105 164 - -
Accr11g00330 243 CDD AP2 105 163 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00330 Accr-Chr11 4351484 4352215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00330 86 184 AP2-EREBP Transcription Factor Family AT2G33710 60.606 8.26e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr11g00330 AP2 1.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00330 - - pcin:129285371 327.405