Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00316 ATGGCTCAGCCCACCAACACGGCGGATCTGAATCAGCACCAGCATCAGCAGCAGTGGACAACGCAGCAACCGCAACACTATCAGCAATGGATGGCTATGCAGTACCCTGCTACCGCCATGGCCATGATGCAGCAGCAGATGATGATGTATCCGCAGCATTATATGCCTTACGTCCACCATTATATGCCCCCTCATCAGCAGCAGCAGCAGCACAAGCCGCAGCCGTATCAGCAGCAGCAGCAGAAGCAAGGGTGGTCGTCCGAGGAGATCAGGACGATATGGCTCGGTGACCTTCATCATTGGATGGATGAGAACTATCTCCATAACTGTTTTGCTCATACAGGCGAGGTTGTATCAGCCAAGGTTATACGAAATAAGCAAACTGGGCAGTCAGAGGGGTTTGGGTTTGTTGAGTTTTATTCACGTGCAGCAGCTGAGAAAGTTTTGAACAACTACAATGGTGCTATTATGCCAAATACGGATCAGCCCTTTCGTCTAAATTGGGCTACTTTCAGCGCGGGTGATAGGAGATCTGATGCTAGTTCTGATCTGTCTATATTTGTCGGGGACCTGGCTGTAGATGTCACTGATGCTATGCTGCATGAAACCTTTGCTAACAAATATACATCTGTAAAGGGAGCCAAAGTTGTCATTGATTCAAACACTGGGCGTTCAAAAGGTTATGGTTTTGTAAGGTTTGGTGATGAAACTGAGAGGTCTAGGGCCATGACTGAAATGAATGGATGCTATTGTTCAAATCGGCCTATGCGTATAGGTGTTGCAACCCCAAAGAAGTACCATGGGTATCAACAACAATATTCTTCCCAAGCTGTAGTATTAGCTAATGGACACTCATTGAACGGTGCCACCACACCAGGTTCCCAGCCTGAAGGGGAATCAAATAACACAACTATTTTTGTTGGAGGCCTCGATTCTGATGTTAGAGATGATGATCTTAGACAACCATTTTTGCAATTTGGTGAGGTTGTCTCAGTCAAGATACCTGTGGGTAAAGGTTGTGGTTTTGTTCAATTTTCTGACAGAAAGAATGCTGAGGAAGCACTTCAAGCATTGAACGGGACAGTAATTGGGAAGCAGACTGTACGGCTTTCTTGGGGTCGCAGTCCTGGAAATAAGCATTGGAGGACAGATTCCAATGGAGGTTACTATGGAGGCCAGTGGCCTGCCGTGCGACAAAACCAGGATCTCAGTATGAACGTTGCTGCTGCTGCAGTTCAAGGGGCATCTTGA 1251 0.47 MAQPTNTADLNQHQHQQQWTTQQPQHYQQWMAMQYPATAMAMMQQQMMMYPQHYMPYVHHYMPPHQQQQQHKPQPYQQQQQKQGWSSEEIRTIWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGFGFVEFYSRAAAEKVLNNYNGAIMPNTDQPFRLNWATFSAGDRRSDASSDLSIFVGDLAVDVTDAMLHETFANKYTSVKGAKVVIDSNTGRSKGYGFVRFGDETERSRAMTEMNGCYCSNRPMRIGVATPKKYHGYQQQYSSQAVVLANGHSLNGATTPGSQPEGESNNTTIFVGGLDSDVRDDDLRQPFLQFGEVVSVKIPVGKGCGFVQFSDRKNAEEALQALNGTVIGKQTVRLSWGRSPGNKHWRTDSNGGYYGGQWPAVRQNQDLSMNVAAAAVQGAS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00316 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 171 IPR000504 GO:0003723
Accr11g00316 416 FunFam Polyadenylate-binding protein RBP47B 90 170 - -
Accr11g00316 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 255 IPR000504 GO:0003723
Accr11g00316 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 159 IPR000504 GO:0003723
Accr11g00316 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 368 IPR000504 GO:0003723
Accr11g00316 416 CDD RRM2_SECp43_like 183 262 - -
Accr11g00316 416 CDD RRM1_SECp43_like 92 172 - -
Accr11g00316 416 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 79 379 - -
Accr11g00316 416 SUPERFAMILY RNA-binding domain, RBD 63 173 IPR035979 GO:0003676
Accr11g00316 416 SUPERFAMILY RNA-binding domain, RBD 294 393 IPR035979 GO:0003676
Accr11g00316 416 Gene3D - 287 403 IPR012677 -
Accr11g00316 416 FunFam Polyadenylate-binding protein RBP47B 172 274 - -
Accr11g00316 416 SMART rrm1_1 92 167 IPR000504 GO:0003723
Accr11g00316 416 SMART rrm1_1 185 259 IPR000504 GO:0003723
Accr11g00316 416 SMART rrm1_1 304 371 IPR000504 GO:0003723
Accr11g00316 416 Gene3D - 49 176 IPR012677 -
Accr11g00316 416 MobiDBLite consensus disorder prediction 1 21 - -
Accr11g00316 416 FunFam Polyadenylate-binding protein RBP47 285 399 - -
Accr11g00316 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 263 IPR000504 GO:0003723
Accr11g00316 416 Gene3D - 177 277 IPR012677 -
Accr11g00316 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 375 IPR000504 GO:0003723
Accr11g00316 416 MobiDBLite consensus disorder prediction 64 83 - -
Accr11g00316 416 SUPERFAMILY RNA-binding domain, RBD 170 276 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00316 Accr-Chr11 4179157 4183122 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00316 90 372 Eukaryotic Initiation Factors Gene Family AT2G23350 28.522 4.38e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00316 - - gmx:100814564 563.918