Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00315 ATGGCTCAGCCCACCAACACGGCGGATCTGAATCAGCACCAGCATCAGCAGCAGTGGACAACGCAGCAACCGCAACACTATCAGCAATGGATGGCTATGCAGTACCCTGCTACCGCCATGGCCATGATGCAGCAGCAGATGATGATGTATCCGCAGCATTATATGCCTTACGTCCACCATTATATGCCCCCTCATCAGCAGCAGCAGCAGCACAAGCCGCAGCCGTATCAGCAGCAGCAGCAGAAGCAAGGGTGGTCGTCCGAGGAGATCAGGACGATATGGCTCGGTGACCTTCATCATTGGATGGATGAGAACTATCTCCATAACTGTTTTGCTCATACAGGCGAGGTTGTATCAGCCAAGGTTATACGAAATAAGCAAACTGGGCAGTCAGAGGGGTTTGGGTTTGTTGAGTTTTATTCACGTGCAGCAGCTGAGAAAGTTTTGAACAACTACAATGGTGCTATTATGCCAAATACGGATCAGCCCTTTCGTCTAAATTGGGCTACTTTCAGCGCGGGTGATAGGAGATCTGATGCTAGTTCTGATCTGTCTATATTTGTCGGGGACCTGGCTGTAGATGTCACTGATGCTATGCTGCATGAAACCTTTGCTAACAAATATACATCTGTAAAGGGAGCCAAAGTTGTCATTGATTCAAACACTGGGCGTTCAAAAGGTTATGGTTTTGTAAGGTTTGGTGATGAAACTGAGAGGTCTAGGGCCATGACTGAAATGAATGGATGCTATTGTTCAAATCGGCCTATGCGTATAGGTGTTGCAACCCCAAAGAAGTACCATGGGTATCAACAACAATATTCTTCCCAAGTATTAGCTAATGGACACTCATTGAACGGTGCCACCACACCAGGTTCCCAGCCTGAAGGGGAATCAAATAACACAACTATTTTTGTTGGAGGCCTCGATTCTGATGTTAGAGATGATGATCTTAGACAACCATTTTTGCAATTTGGTGAGGTTGTCTCAGTCAAGATACCTGTGGGTAAAGGTTGTGGTTTTGTTCAATTTTCTGACAGAAAGAATGCTGAGGAAGCACTTCAAGCATTGAACGGGACAGTAATTGGGAAGCAGACTGTACGGCTTTCTTGGGGTCGCAGTCCTGGAAATAAGCATTGGAGGACAGATTCCAATGGAGGTTACTATGGAGGCCAGTGGCCTGCCGTGCGACAAAACCAGGATCTCAGTATGAACGTTGCTGCTGCTGCAGTTCAAGGGGCATCTTGA 1245 0.4699 MAQPTNTADLNQHQHQQQWTTQQPQHYQQWMAMQYPATAMAMMQQQMMMYPQHYMPYVHHYMPPHQQQQQHKPQPYQQQQQKQGWSSEEIRTIWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGFGFVEFYSRAAAEKVLNNYNGAIMPNTDQPFRLNWATFSAGDRRSDASSDLSIFVGDLAVDVTDAMLHETFANKYTSVKGAKVVIDSNTGRSKGYGFVRFGDETERSRAMTEMNGCYCSNRPMRIGVATPKKYHGYQQQYSSQVLANGHSLNGATTPGSQPEGESNNTTIFVGGLDSDVRDDDLRQPFLQFGEVVSVKIPVGKGCGFVQFSDRKNAEEALQALNGTVIGKQTVRLSWGRSPGNKHWRTDSNGGYYGGQWPAVRQNQDLSMNVAAAAVQGAS 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00315 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 171 IPR000504 GO:0003723
Accr11g00315 414 CDD RRM2_SECp43_like 183 262 - -
Accr11g00315 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 301 373 IPR000504 GO:0003723
Accr11g00315 414 CDD RRM1_SECp43_like 92 172 - -
Accr11g00315 414 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 70 377 - -
Accr11g00315 414 SUPERFAMILY RNA-binding domain, RBD 63 173 IPR035979 GO:0003676
Accr11g00315 414 SMART rrm1_1 302 369 IPR000504 GO:0003723
Accr11g00315 414 SMART rrm1_1 185 259 IPR000504 GO:0003723
Accr11g00315 414 SMART rrm1_1 92 167 IPR000504 GO:0003723
Accr11g00315 414 FunFam Polyadenylate-binding protein RBP47B 172 274 - -
Accr11g00315 414 MobiDBLite consensus disorder prediction 281 300 - -
Accr11g00315 414 MobiDBLite consensus disorder prediction 1 21 - -
Accr11g00315 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 263 IPR000504 GO:0003723
Accr11g00315 414 Gene3D - 52 182 IPR012677 -
Accr11g00315 414 SUPERFAMILY RNA-binding domain, RBD 184 374 IPR035979 GO:0003676
Accr11g00315 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 303 366 IPR000504 GO:0003723
Accr11g00315 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 159 IPR000504 GO:0003723
Accr11g00315 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 255 IPR000504 GO:0003723
Accr11g00315 414 FunFam Polyadenylate-binding protein RBP47B 90 170 - -
Accr11g00315 414 FunFam Polyadenylate-binding protein RBP47 283 397 - -
Accr11g00315 414 MobiDBLite consensus disorder prediction 64 83 - -
Accr11g00315 414 Gene3D - 183 260 IPR012677 -
Accr11g00315 414 Gene3D - 285 400 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00315 Accr-Chr11 4179157 4183122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00315 90 370 Eukaryotic Initiation Factors Gene Family AT2G23350 28.028 7.84e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00315 - - gmx:100814564 555.829