Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00302 ATGGGCTCGCTTCCTCCTCCACAACTGAGCTTGGATTTGAGACCTACTTTTGTTCCTAAGACGATCACTGATTTCCTCCACGAAGTGTCCACGATCGGCAATTCGTCCGATAAGCTCTCCAGGCTCGACGATTTCCTCAAGAGATTGGAAGAGGAAATGAGGAAGATCGATGCCTTTAGGCGTGAGCTTCCTCTCTGTATGCTCCTCTTAAACGATGCAATTTTAGTTCTGAAGGAGGAATCGGCAAAATTCAGGATACCTAATTCTCAGCCTATATTGGAAGAATTTATTCCCTTAAGGAAAGAATGTGATCAGAAGGAGGAAAATGAAACAGAAAAGGAATGCCAAGATAAGAAGAATTGGATGAGTTCTGTACAACTGTGGAACACTGATAATAATACCACCTGTGAACAAAAAGAACATTATAAATTAGAAAACAAGAAAAACGAAGAACAGTCTGTGCCAGAGGATCCTTTCAAATCTTGTAGAAGGAGGGTTTTTATGCCTTTTCCAACATACTGTCCAGCTCCTGTGACAACTGTGGCTACCAAGGAAGAAAAGGAAGAGTCTGATGTCAATGGACTTTCTCTTGTGACTCCTGGAGTTAAAAATCTGAGGGAGGGCTCTGTTTCTAGCGGATCAAGAATATCATCTGGCAGGGCGGTTTCATCCCCTCCTTGCAGTGACCAACCAAGTTTACGCCCTGGACAGCATCAGACTGCTCGGAAACAAAGAAGGTGTTGGTCACCAGAGCTGCATCGTCGATTTGTCAATGCCCTGCAGCAACTTGGAGGTTCTCGAGCTGCCACTCCAAAGCAAATTAGAGAACTCATGCAAGTTGATGGCCTGACCAATGATGAAGTGAAAAGCCATTTACAAAAATACCGACTACATACCCGAAGACTTCCTGCTTCCGCAGCTACACCTGGTAACCAGTCTGTTGTAGTTCTTGGGGGTTTATGGATGTCCCAAGATCAGTATAATGACTCCTCCAAGGGTAGCGTTTCAGGGTCTGGCTCTCCTCAAGGTCCCCTCCAGTTAACTTCAGGGTCTGGAGGAGGAATGTCCCAAACTGAAGATGACAGCTTGGAAGATGATGAGGATGATGAAAAATCCAGAGAGCGATAG 1128 0.4504 MGSLPPPQLSLDLRPTFVPKTITDFLHEVSTIGNSSDKLSRLDDFLKRLEEEMRKIDAFRRELPLCMLLLNDAILVLKEESAKFRIPNSQPILEEFIPLRKECDQKEENETEKECQDKKNWMSSVQLWNTDNNTTCEQKEHYKLENKKNEEQSVPEDPFKSCRRRVFMPFPTYCPAPVTTVATKEEKEESDVNGLSLVTPGVKNLREGSVSSGSRISSGRAVSSPPCSDQPSLRPGQHQTARKQRRCWSPELHRRFVNALQQLGGSRAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRLPASAATPGNQSVVVLGGLWMSQDQYNDSSKGSVSGSGSPQGPLQLTSGSGGGMSQTEDDSLEDDEDDEKSRER 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00302 375 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 10 372 IPR044787 GO:0003700|GO:0006355
Accr11g00302 375 MobiDBLite consensus disorder prediction 327 358 - -
Accr11g00302 375 MobiDBLite consensus disorder prediction 205 238 - -
Accr11g00302 375 MobiDBLite consensus disorder prediction 327 375 - -
Accr11g00302 375 MobiDBLite consensus disorder prediction 204 246 - -
Accr11g00302 375 Pfam Myb-like DNA-binding domain 245 296 IPR001005 -
Accr11g00302 375 NCBIfam myb-like DNA-binding domain, SHAQKYF class 243 298 IPR006447 GO:0003677
Accr11g00302 375 FunFam Myb family transcription factor 242 300 - -
Accr11g00302 375 SUPERFAMILY Homeodomain-like 240 301 IPR009057 -
Accr11g00302 375 Gene3D - 242 300 - -
Accr11g00302 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 240 300 IPR017930 -
Accr11g00302 375 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00302 Accr-Chr11 4051390 4053527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00302 8 322 G2-like Transcription Factor Family AT2G03500 39.941 1.07e-60 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Accr11g00302 Myb_DNA-binding 4.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00302 - - qsa:O6P43_011684 463.381