Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00279 ATGCCGCGACCTTGCTTTCACAAGCTTATTTGTCCCTCCACTCTCCAATCTCGGCAGCTGATTATTCCAGATCACTTTCTGAGAAAATTTGGGGGTGAGCTTTCTACAGTTGCCACCCTTACTGTTCCAGATGGCAGTGTCTGGCGAGTAGGATTAAAAAGGTCGGGCAACAAATTTTGGCTCCTTGATGGCTGGCAGGAATTTGTTCAACGCTACTCCATTGGTGTTGGTTACTTGCTTGTATTCAGATATGAAGGGAAATCATCATTCAATGTTCATATTTTCAATTTGGCTACTTGTGAGATAAATTACCAATCAAACACACATAGGAGTAATGAAGGGACTTTCTTTTCTAATCAACATCTTAATTTTGATGATATTGAAGATGAAGAAGACTCCATTGAATTCTTAGATTCATCACCTTCATCTGCTACTCCTGGTGCATTGCAGAACAAGGCTTTTCCTGGAACTCCAGCATTGCAGAATTTGTTCCATGGGTCTAAATTTAACTCCATAAACTGGGGAGATGGGGGCAATTCCCTTTCTTCTAAAGGTGCCAATTCTCAAGACAATCAATCAAGCAGAAATATAGGTGTTCAGTTTAATGCAGTTGAGTTCAAAAAGTCTACTGAAGAGCTAAAATTGCGTTTCGCTAATGAGGAAATGCAAAGAGTTAAGAAAACTATAAGAAAGAAGCGGAAAATGGAACCAAATGGACAAGAACCTTCAGCTCAACATGAAGAAGAGGGGGAAATGCGCTATAGATTTTATGAAAGTGCTTCTGCTAGAAAAAGAACCGTGACAGCTGAAGAAAGAGAAAGGGCAATTAATTCAGCAAAAGCATTTGAACCGGCTAATCCGTTCTGTCGGGTTGTCCTGCGACCCTCCTATTTATACAGGGGATGCATAATGTATTTGCCATCCTGTTTTGCAGAAAAGCATTTGAATGAGGTTTCAGGATTCATTAAACTCCAAATCTCTGATGGAAAACAGTGGCCTGTTCGCTGCCTTTACAGAGGAGGGAGAGCGAAGTTAAGCCAAGGGTGGTTTGAATTTTCACTGGAAAATAATTTAGGCGAAGGGGATGTCTGTGTTTTTGAGCTTCTTAGAATGAAAGAAGTAGTGTTGAAAGTTACTATATTTCGTGTCACTGAGGATGCAGGATTGATGAGCCCTCCTCCTATGCTTCAACACCAAAATGTCAGCCCAGCAAAACTATTGAATACTCCTATGCAACAAACCTTGATGCCAGCGAAACTGATTAGAAACTAG 1272 0.4072 MPRPCFHKLICPSTLQSRQLIIPDHFLRKFGGELSTVATLTVPDGSVWRVGLKRSGNKFWLLDGWQEFVQRYSIGVGYLLVFRYEGKSSFNVHIFNLATCEINYQSNTHRSNEGTFFSNQHLNFDDIEDEEDSIEFLDSSPSSATPGALQNKAFPGTPALQNLFHGSKFNSINWGDGGNSLSSKGANSQDNQSSRNIGVQFNAVEFKKSTEELKLRFANEEMQRVKKTIRKKRKMEPNGQEPSAQHEEEGEMRYRFYESASARKRTVTAEERERAINSAKAFEPANPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNEVSGFIKLQISDGKQWPVRCLYRGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLKVTIFRVTEDAGLMSPPPMLQHQNVSPAKLLNTPMQQTLMPAKLIRN 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00279 423 MobiDBLite consensus disorder prediction 234 250 - -
Accr11g00279 423 Gene3D - 266 386 IPR015300 -
Accr11g00279 423 ProSiteProfiles B3 DNA-binding domain profile. 289 384 IPR003340 GO:0003677
Accr11g00279 423 SUPERFAMILY DNA-binding pseudobarrel domain 3 100 IPR015300 -
Accr11g00279 423 PANTHER B3 DOMAIN-CONTAINING 3 372 - -
Accr11g00279 423 SMART B3_2 289 384 IPR003340 GO:0003677
Accr11g00279 423 SMART B3_2 6 98 IPR003340 GO:0003677
Accr11g00279 423 CDD B3_DNA 4 96 IPR003340 GO:0003677
Accr11g00279 423 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Accr11g00279 423 CDD B3_DNA 287 382 IPR003340 GO:0003677
Accr11g00279 423 MobiDBLite consensus disorder prediction 230 250 - -
Accr11g00279 423 Coils Coil 208 235 - -
Accr11g00279 423 Pfam B3 DNA binding domain 7 95 IPR003340 GO:0003677
Accr11g00279 423 Pfam B3 DNA binding domain 292 383 IPR003340 GO:0003677
Accr11g00279 423 SUPERFAMILY DNA-binding pseudobarrel domain 282 383 IPR015300 -
Accr11g00279 423 Gene3D - 1 100 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00279 Accr-Chr11 3793227 3796248 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00279 1 388 B3 DNA Binding Superfamily AT3G18990 52.273 3.87e-132 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Accr11g00279 B3 2.9e-16 CL0405