Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00278 ATGCCGCGACCTTGCTTTCACAAGCTTATTTGTCCCTCCACTCTCCAATCTCGGCAGCTGATTATTCCAGATCACTTTCTGAGAAAATTTGGGGGTGAGCTTTCTACAGTTGCCACCCTTACTGTTCCAGATGGCAGTGTCTGGCGAGTAGGATTAAAAAGGTCGGGCAACAAATTTTGGCTCCTTGATGGCTGGCAGGAATTTGTTCAACGCTACTCCATTGGTGTTGGTTACTTGCTTGTATTCAGATATGAAGGGAAATCATCATTCAATGTTCATATTTTCAATTTGGCTACTTATGAAGAAGACTCCATTGAATTCTTAGATTCATCACCTTCATCTGCTACTCCTGGTGCATTGCAGAACAAGGCTTTTCCTGGAACTCCAGCATTGCAGAATTTGTTCCATGGGTCTAAATTTAACTCCATAAACTGGGGAGATGGGGGCAATTCCCTTTCTTCTAAAGGTGCCAATTCTCAAGACAATCAATCAAGCAGAAATATAGGTGTTCAGTTTAATGCAGTTGAGTTCAAAAAGTCTACTGAAGAGCTAAAATTGCGTTTCGCTAATGAGGAAATGCAAAGAGTTAAGAAAACTATAAGAAAGAAGCGGAAAATGGAACCAAATGGACAAGAACCTTCAGCTCAACATGAAGAAGAGGGGGAAATGCGCTATAGATTTTATGAAAGTGCTTCTGCTAGAAAAAGAACCGTGACAGCTGAAGAAAGAGAAAGGGCAATTAATTCAGCAAAAGCATTTGAACCGGCTAATCCGTTCTGTCGGGTTGTCCTGCGACCCTCCTATTTATACAGGGGATGCATAATGTATTTGCCATCCTGTTTTGCAGAAAAGCATTTGAATGAGGTTTCAGGATTCATTAAACTCCAAATCTCTGATGGAAAACAGTGGCCTGTTCGCTGCCTTTACAGAGGAGGGAGAGCGAAGTTAAGCCAAGGGTGGTTTGAATTTTCACTGGAAAATAATTTAGGCGAAGGGGATGTCTGTGTTTTTGAGCTTCTTAGAATGAAAGAAGTAGTGTTGAAAGTTACTATATTTCGTGTCACTGAGGATGCAGGATTGATGAGCCCTCCTCCTATGCTTCAACACCAAAATGTCAGCCCAGCAAAACTATTGAATACTCCTATGCAACAAACCTTGATGCCAGCGAAACTGATTAGAAACTAG 1185 0.4152 MPRPCFHKLICPSTLQSRQLIIPDHFLRKFGGELSTVATLTVPDGSVWRVGLKRSGNKFWLLDGWQEFVQRYSIGVGYLLVFRYEGKSSFNVHIFNLATYEEDSIEFLDSSPSSATPGALQNKAFPGTPALQNLFHGSKFNSINWGDGGNSLSSKGANSQDNQSSRNIGVQFNAVEFKKSTEELKLRFANEEMQRVKKTIRKKRKMEPNGQEPSAQHEEEGEMRYRFYESASARKRTVTAEERERAINSAKAFEPANPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNEVSGFIKLQISDGKQWPVRCLYRGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLKVTIFRVTEDAGLMSPPPMLQHQNVSPAKLLNTPMQQTLMPAKLIRN 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00278 394 Gene3D - 237 357 IPR015300 -
Accr11g00278 394 Pfam B3 DNA binding domain 263 354 IPR003340 GO:0003677
Accr11g00278 394 Pfam B3 DNA binding domain 7 95 IPR003340 GO:0003677
Accr11g00278 394 ProSiteProfiles B3 DNA-binding domain profile. 260 355 IPR003340 GO:0003677
Accr11g00278 394 SMART B3_2 6 98 IPR003340 GO:0003677
Accr11g00278 394 SMART B3_2 260 355 IPR003340 GO:0003677
Accr11g00278 394 MobiDBLite consensus disorder prediction 205 221 - -
Accr11g00278 394 PANTHER B3 DOMAIN-CONTAINING 3 343 - -
Accr11g00278 394 CDD B3_DNA 258 353 IPR003340 GO:0003677
Accr11g00278 394 CDD B3_DNA 4 96 IPR003340 GO:0003677
Accr11g00278 394 Coils Coil 179 206 - -
Accr11g00278 394 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Accr11g00278 394 Gene3D - 1 98 IPR015300 -
Accr11g00278 394 MobiDBLite consensus disorder prediction 201 221 - -
Accr11g00278 394 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Accr11g00278 394 SUPERFAMILY DNA-binding pseudobarrel domain 253 354 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00278 Accr-Chr11 3793227 3796248 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00278 1 359 B3 DNA Binding Superfamily AT3G18990 50.639 1.83e-122 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Accr11g00278 B3 2.5e-16 CL0405