Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00261 ATGGCGGACTATCAGAGCAGTGACGAAGATTCCCAATACTCCGATCAGGAGTACTCGGACGACTACTTGTTTGAGGAGCCCGATTCTAAATTGGTCTCTGCCACTGCCAAGGGTCCCACAATCAAGGTTATTACAAGGGACACACTTTCAACCGCACAGGATGAGGATTTGTCCACAATCATGGATTTGCTATTAGTGGAAAAGCATCAAGCACGTAGACTTCTTATTTTTCATAGGTGGGATAAGGAGGAATTAGCTAGGACGTTCGTGGAAAAGGGGAAGGCATCACTCCTTGCTGAAGCTGGTGTTAGTGAAAAAGTACATGGTGATTCGGGCTCATCGGTTGCTTCTTCAATGACGTGTGAAATCTGCTTCGAGGTTGTTCCCTGTAGTGAAACCACAAGGATGGACTGTGGTCACTGTTTTTGCAACGATTGTTGGACTAGATATTTCATTGTCAATATAAATGAAGGTCAAAGTAAACACATTAAATGCATGGCACCCGGATGCAAATATTATTGCAACGAGGATGTTGTAAGGAGAATACTCAGGGAAGAGAACTGTGATATGGCAGAGAAATTCGAACGTTTTCTTCTTGAGTCCTACATTGAAGACAACAGAAGAGCAAAGTGGTGTCCCAGCACTCCTCACTGTGGGAATGCAATCTGTGTTGAGGATGATGATGTGTTATTGTTATATGAGGTGGAATGTTCGTGTGGCTTTCAATTCTGTTTTAAGTGTTTGTCAGAACCACATTCCCCTTGTTCCTGTTTGATGAGGGAACGTTGGGCTGAAAAGTCTAATGGTGCCGGTTGGTTAAATCATAACACAGAACCTTGTCCAAAATGCGACAGATTAGTGTACAAGAGTGAAGGTTGTAAGTCGGTTATCTGTATTTGTGGCCGAGCATTTAGGTGGCGGGCCGGTGGAAGAAAGGAAAAGGCTGGAGATGCGAATCGGGACAAAAGCCAATTTACGCGCTATCATAAAGCTCATATGAATTCTTTACTTAAAGGATCTAGATTTACAGAAGCTATGGGAAATATGGCTCCTTACCTGGGAGACAATTGCTGGGTAAATGAGGGATACTTCACACTTGTCAGGTCTTGGCGAGTCCTATCATATTCATATCCATTTGCATTTTATTTGTTTAATGAAGAAAGGTTAGACATGGAAACGAGAATAAAATGCAATTTATTTGAGTATCATCTGAAGCAGCTTAAGAAAAATCTTAAGAAGCTCTCTAAAATTTTCAAAGAGCTCTTTAAAAGTGATGAGGTTTCGGATATAAAGATGCAGGTTATCAATTTGTCAGCAGTTATTGACAAGTTTTGTGAGTATGTGTATGAGTTCATCCAGGAAGACTTGTTGCGTTCTCTCCCTCACAGGATAGCTCCATACCAGTTATTGAAGCCAAGACCTCAGTAA 1428 0.4167 MADYQSSDEDSQYSDQEYSDDYLFEEPDSKLVSATAKGPTIKVITRDTLSTAQDEDLSTIMDLLLVEKHQARRLLIFHRWDKEELARTFVEKGKASLLAEAGVSEKVHGDSGSSVASSMTCEICFEVVPCSETTRMDCGHCFCNDCWTRYFIVNINEGQSKHIKCMAPGCKYYCNEDVVRRILREENCDMAEKFERFLLESYIEDNRRAKWCPSTPHCGNAICVEDDDVLLLYEVECSCGFQFCFKCLSEPHSPCSCLMRERWAEKSNGAGWLNHNTEPCPKCDRLVYKSEGCKSVICICGRAFRWRAGGRKEKAGDANRDKSQFTRYHKAHMNSLLKGSRFTEAMGNMAPYLGDNCWVNEGYFTLVRSWRVLSYSYPFAFYLFNEERLDMETRIKCNLFEYHLKQLKKNLKKLSKIFKELFKSDEVSDIKMQVINLSAVIDKFCEYVYEFIQEDLLRSLPHRIAPYQLLKPRPQ 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00261 475 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 48 413 IPR031127 GO:0004842|GO:0016567
Accr11g00261 475 SMART ibrneu5 192 257 IPR002867 GO:0008270
Accr11g00261 475 Pfam IBR domain, a half RING-finger domain 192 257 IPR002867 GO:0008270
Accr11g00261 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 207 IPR013083 -
Accr11g00261 475 Gene3D - 311 458 - -
Accr11g00261 475 ProSiteProfiles Zinc finger RING-type profile. 121 165 IPR001841 -
Accr11g00261 475 SUPERFAMILY RING/U-box 118 204 - -
Accr11g00261 475 Pfam Ariadne domain 311 468 IPR045840 -
Accr11g00261 475 FunFam RBR-type E3 ubiquitin transferase 115 206 - -
Accr11g00261 475 CDD RING-HC_RBR_TRIAD1 119 171 - -
Accr11g00261 475 SUPERFAMILY RING/U-box 192 263 - -
Accr11g00261 475 SUPERFAMILY RING/U-box 272 311 - -
Accr11g00261 475 ProSiteProfiles TRIAD supradomain profile. 117 335 IPR044066 -
Accr11g00261 475 CDD BRcat_RBR_ANKIB1 199 266 - -
Accr11g00261 475 Coils Coil 404 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00261 Accr-Chr11 3640030 3642587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00261 61 468 ARIADNE family AT2G16090 47.598 6.07e-123 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00261 K11968 - gmx:100783343 461.84