Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00223 ATGTCTGTTGCGGAGCTCAAGGAGCGTCACTTGGCGGCTACGGAGACGGTGAACGCTCTCAGGGAGCGGTTGAAGCAGCGACGACTTTCTTTACTCGATACAGATGTTGCTTCATACGCGAGGTCTCAAGGTAGAACTCCTGTTACCTTTGGTCCTACGGATCTCGTTTGCTGTAGAACTTTACAGGGTCATACGGGAAAGGTATATTCATTGGATTGGGCATCTGAAAAAAATAGAATTGTTAGTGCATCCCAAGATGGACGACTTATAGTATGGAATGCCCTTACTAGCCAGAAAACTCATGCCATAAAGCTGCCTTGTGCATGGGTCATGACCTGTGCTTTCTCACCAACTGGTCAGTCTGTTGCATGCGGTGGTCTTGATAGTGTTTGCTCTATTTTCAATCTGAATTCCCCTACTGACAGGGATGGTAATCTGCCTGTTTCACGGACGCTTAGTGGACATAAGGGTTATGTCTCCTCTTGTCAGTTTGTTCCAGATGATGACACTCACCTTATTACCAGTTCTGGTGATCAGACATGTGTTTTGTGGGATATTACTACAGGCCTTAGAACATCAGTTTTTGGAGGTGAATTTCAGTCAGGACATACTTCAGACGTATTAAGCATTTCTATCAATGGATCCAATTCAAAATTGTTTGTATCCGGTTCTTGTGATGGAACTGCCCGATTGTGGGATACACGTGTAGCAAGCCGAGCTGTGCAGACATTTCATGGGCATGAGGGAGATGTTAATGCTGTCAAATTCTTTCCTGATGGAAATAGATTTGGAACTGGTTCTGCTGATGGAACTTGCCGGTTATTTGACACTAGGACTGGTCACCAACTACAAAAATACTATCAACAACATGATGACAATGACAGTGACACCCCGCATGTGACCTCCATTGCATTCTCCATATCAGGAAGGCTTCTTTTTGCTGGATACATGAACGGTGATTGCTATGTTTGGGACACTTTATTAGCAAAGGTGGTATTGAATTTAGGATCTCTTCAGAACTCTCATGAGGGCAGGATCAGCTGTTTAGGTTTGTCAGCTGATGGAAGTGCCTTGTGTACAGGAAGCTTGGACTCAAACTTAAAGATTTGGGCGTTTGGAGGGCATAGAAAGGTGGTGTGA 1140 0.4456 MSVAELKERHLAATETVNALRERLKQRRLSLLDTDVASYARSQGRTPVTFGPTDLVCCRTLQGHTGKVYSLDWASEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDRDGNLPVSRTLSGHKGYVSSCQFVPDDDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTSDVLSISINGSNSKLFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNAVKFFPDGNRFGTGSADGTCRLFDTRTGHQLQKYYQQHDDNDSDTPHVTSIAFSISGRLLFAGYMNGDCYVWDTLLAKVVLNLGSLQNSHEGRISCLGLSADGSALCTGSLDSNLKIWAFGGHRKVV 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00223 379 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 235 - -
Accr11g00223 379 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 102 IPR001680 GO:0005515
Accr11g00223 379 ProSiteProfiles Trp-Asp (WD) repeats profile. 339 370 IPR001680 GO:0005515
Accr11g00223 379 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 93 - -
Accr11g00223 379 FunFam Guanine nucleotide-binding protein subunit beta 2 371 - -
Accr11g00223 379 Pfam WD domain, G-beta repeat 284 325 IPR001680 GO:0005515
Accr11g00223 379 Pfam WD domain, G-beta repeat 241 276 IPR001680 GO:0005515
Accr11g00223 379 Pfam WD domain, G-beta repeat 150 185 IPR001680 GO:0005515
Accr11g00223 379 Pfam WD domain, G-beta repeat 57 93 IPR001680 GO:0005515
Accr11g00223 379 Pfam WD domain, G-beta repeat 201 233 IPR001680 GO:0005515
Accr11g00223 379 Pfam WD domain, G-beta repeat 341 370 IPR001680 GO:0005515
Accr11g00223 379 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 242 IPR001680 GO:0005515
Accr11g00223 379 PIRSF GNBP_B 1 373 - -
Accr11g00223 379 PRINTS G protein beta WD-40 repeat signature 220 234 IPR020472 -
Accr11g00223 379 PRINTS G protein beta WD-40 repeat signature 172 186 IPR020472 -
Accr11g00223 379 PRINTS G protein beta WD-40 repeat signature 80 94 IPR020472 -
Accr11g00223 379 Coils Coil 3 23 - -
Accr11g00223 379 PRINTS Beta G protein (transducin) signature 99 114 IPR001632 -
Accr11g00223 379 PRINTS Beta G protein (transducin) signature 117 134 IPR001632 -
Accr11g00223 379 PRINTS Beta G protein (transducin) signature 80 94 IPR001632 -
Accr11g00223 379 PRINTS Beta G protein (transducin) signature 61 77 IPR001632 -
Accr11g00223 379 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 339 379 - -
Accr11g00223 379 CDD WD40 57 371 - -
Accr11g00223 379 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 280 - -
Accr11g00223 379 ProSitePatterns Trp-Asp (WD) repeats signature. 172 186 IPR019775 -
Accr11g00223 379 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 4 371 IPR016346 GO:0007165
Accr11g00223 379 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 285 IPR001680 GO:0005515
Accr11g00223 379 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 152 189 - -
Accr11g00223 379 SUPERFAMILY WD40 repeat-like 54 370 IPR036322 GO:0005515
Accr11g00223 379 Gene3D - 3 371 IPR015943 GO:0005515
Accr11g00223 379 ProSiteProfiles Trp-Asp (WD) repeats profile. 152 194 IPR001680 GO:0005515
Accr11g00223 379 SMART WD40_4 96 135 IPR001680 GO:0005515
Accr11g00223 379 SMART WD40_4 145 185 IPR001680 GO:0005515
Accr11g00223 379 SMART WD40_4 279 325 IPR001680 GO:0005515
Accr11g00223 379 SMART WD40_4 54 93 IPR001680 GO:0005515
Accr11g00223 379 SMART WD40_4 237 276 IPR001680 GO:0005515
Accr11g00223 379 SMART WD40_4 331 371 IPR001680 GO:0005515
Accr11g00223 379 SMART WD40_4 192 233 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00223 Accr-Chr11 3109088 3112538 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00223 92 372 U-box Gene Family AT1G04510 25.455 9.23e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00223 K04536 - cave:132175241 716.842