Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00213 ATGGCGGCCGCAGATGTTGAATACAGATGCTTCGTCGGGGGGCTCGCATGGGCCACCGACAGCGAGGCCCTTGAGAAGGCCTTTGCTCCGTATGGCGAGATCGTCGAATCGAAGGTTATTAACGATCGTGAGACTGGTAGGTCAAGAGGGTTCGGATTCGTAACTTTCGCAAATGAGCAGGCCATGAGAGATGCTATTGAGGGGATGAACGGTCAGGATCTTGATGGCCGTAATATTACTGTGAACGAGGCCCAAAATCGTGGCCGAGGTGGTGGTGGCGGTGGATATGGCGGCGGCGGTGGTGGTGGTGGATACGGTGGTGGTGGTGGTGGATATAGCCGTGGTGGAGGAGGATACGGAGGTGGAGGCCGCCGTGAAGGTGGATACAACCGTAACGGTGGTGGAGGCTACGGAGGCGGAAACGGTGGTGGTGGCTACGGCGGTGGTGGCTATGGTGGTGGACGTGATCGTGGGTATGGTGATGGTGGAGCTCGCTACTCCAGAGGCGGTGGTGCCTCGGATGGAAGCTGGAGAAACTAG 540 0.5833 MAAADVEYRCFVGGLAWATDSEALEKAFAPYGEIVESKVINDRETGRSRGFGFVTFANEQAMRDAIEGMNGQDLDGRNITVNEAQNRGRGGGGGGYGGGGGGGGYGGGGGGYSRGGGGYGGGGRREGGYNRNGGGGYGGGNGGGGYGGGGYGGGRDRGYGDGGARYSRGGGASDGSWRN 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00213 179 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
Accr11g00213 179 MobiDBLite consensus disorder prediction 145 179 - -
Accr11g00213 179 FunFam Glycine-rich RNA-binding protein GRP1A 2 109 - -
Accr11g00213 179 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Accr11g00213 179 SMART rrm1_1 9 82 IPR000504 GO:0003723
Accr11g00213 179 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 5 160 - -
Accr11g00213 179 Gene3D - 2 106 IPR012677 -
Accr11g00213 179 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Accr11g00213 179 CDD RRM2_NsCP33_like 9 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00213 Accr-Chr11 3004802 3005631 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00213 10 88 Eukaryotic Initiation Factors Gene Family AT4G34110 37.975 3.88e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00213 - K13195 fve:101299909 160.229