Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00212 ATGGCGGCCGCAGATGTTGAATACAGATGCTTCGTCGGGGGGCTCGCATGGGCCACCGACAGCGAGGCCCTTGAGAAGGCCTTTGCTCCGTATGGCGAGATCGTCGAATCGAAGGTTATTAACGATCGTGAGACTGGTAGGTCAAGAGGGTTCGGATTCGTAACTTTCGCAAATGAGCAGGCCATGAGAGATGCTATTGAGGGGATGAACGGTCAGGATCTTGATGGCCGTAATATTACTGTGAACGAGGCCCAAAATCGTGGCCGAGGTGGTGGTGGCGGATACGGAGGTGGAGGCCGCCGTGAAGGTGGATACAACCGTAACGGTGGTGGAGGCTACGGAGGCGGAAACGGTGGTGGTGGCTACGGCGGTGGTGGCTATGGTGGTGGACGTGATCGTGGGTATGGTGATGGTGGAGCTCGCTACTCCAGAGGCGGTGGTGCCTCGGATGGAAGCTGGAGAAACTAG 468 0.5748 MAAADVEYRCFVGGLAWATDSEALEKAFAPYGEIVESKVINDRETGRSRGFGFVTFANEQAMRDAIEGMNGQDLDGRNITVNEAQNRGRGGGGGYGGGGRREGGYNRNGGGGYGGGNGGGGYGGGGYGGGRDRGYGDGGARYSRGGGASDGSWRN 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00212 155 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Accr11g00212 155 SMART rrm1_1 9 82 IPR000504 GO:0003723
Accr11g00212 155 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Accr11g00212 155 PANTHER GEO13361P1-RELATED 4 148 - -
Accr11g00212 155 Gene3D - 2 123 IPR012677 -
Accr11g00212 155 CDD RRM2_NsCP33_like 9 84 - -
Accr11g00212 155 MobiDBLite consensus disorder prediction 69 155 - -
Accr11g00212 155 FunFam Glycine-rich RNA-binding protein GRP1A 2 116 - -
Accr11g00212 155 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00212 Accr-Chr11 3004802 3005631 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00212 10 88 Eukaryotic Initiation Factors Gene Family AT4G34110 37.975 4.02e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00212 - K13195 nnu:104595682 160.999